Uses of Class
com.genologics.ri.file.ClarityFile

Packages that use ClarityFile

Package	Description
com.genologics.ri.artifact
com.genologics.ri.automation
com.genologics.ri.file
com.genologics.ri.process
com.genologics.ri.processtype
com.genologics.ri.project
com.genologics.ri.sample
org.cruk.clarity.api	The main public package of the Clarity API.
org.cruk.clarity.api.cache	Package supporting caching of Clarity entities in memory (or, if so configured, on disk) to reduce the amount of traffic being sent to and from the REST API.
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.

Uses of ClarityFile in com.genologics.ri.artifact

Fields in com.genologics.ri.artifact declared as ClarityFile

Modifier and Type	Field	Description
protected ClarityFile	Artifact.file

Methods in com.genologics.ri.artifact that return ClarityFile

Modifier and Type	Method	Description
ClarityFile	Artifact.getFile()	File provides a URI linking to the detailed representation of the File associated with the Artifact.

Methods in com.genologics.ri.artifact with parameters of type ClarityFile

Modifier and Type	Method	Description
void	Artifact.setFile(ClarityFile value)

Uses of ClarityFile in com.genologics.ri.automation

Fields in com.genologics.ri.automation with type parameters of type ClarityFile

Modifier and Type	Field	Description
protected List<ClarityFile>	Automation.files

Methods in com.genologics.ri.automation that return types with arguments of type ClarityFile

Modifier and Type	Method	Description
List<ClarityFile>	Automation.getFiles()

Uses of ClarityFile in com.genologics.ri.file

Fields in com.genologics.ri.file with type parameters of type ClarityFile

Modifier and Type	Field	Description
protected List<ClarityFile>	ClarityFileBatchFetchResult.files

Methods in com.genologics.ri.file that return ClarityFile

Modifier and Type	Method	Description
ClarityFile	ObjectFactory.createFile()

Methods in com.genologics.ri.file that return types with arguments of type ClarityFile

Modifier and Type	Method	Description
javax.xml.bind.JAXBElement<ClarityFile>	ObjectFactory.createFile(ClarityFile value)
Class<ClarityFile>	ClarityFile.getEntityClass()
Class<ClarityFile>	FileLink.getEntityClass()
List<ClarityFile>	ClarityFileBatchFetchResult.getFiles()
List<ClarityFile>	ClarityFileBatchFetchResult.getList()
Iterator<ClarityFile>	ClarityFileBatchFetchResult.iterator()

Methods in com.genologics.ri.file with parameters of type ClarityFile

Modifier and Type	Method	Description
javax.xml.bind.JAXBElement<ClarityFile>	ObjectFactory.createFile(ClarityFile value)

Method parameters in com.genologics.ri.file with type arguments of type ClarityFile

Modifier and Type	Method	Description
void	ClarityFileBatchFetchResult.addForCreate(Collection<ClarityFile> entities)
void	ClarityFileBatchFetchResult.addForUpdate(Collection<ClarityFile> entities)

Constructors in com.genologics.ri.file with parameters of type ClarityFile

Modifier	Constructor	Description
	ClarityFile(ClarityFile original)

Constructor parameters in com.genologics.ri.file with type arguments of type ClarityFile

Modifier	Constructor	Description
	FileLink(LimsEntityLinkable<ClarityFile> link)

Uses of ClarityFile in com.genologics.ri.process

Fields in com.genologics.ri.process with type parameters of type ClarityFile

Modifier and Type	Field	Description
protected List<ClarityFile>	ClarityProcess.files

Methods in com.genologics.ri.process that return ClarityFile

Modifier and Type	Method	Description
ClarityFile	ClarityProcess.addFile(ClarityFile f)

Methods in com.genologics.ri.process that return types with arguments of type ClarityFile

Modifier and Type	Method	Description
List<ClarityFile>	ClarityProcess.getFiles()

Methods in com.genologics.ri.process with parameters of type ClarityFile

Modifier and Type	Method	Description
ClarityFile	ClarityProcess.addFile(ClarityFile f)

Uses of ClarityFile in com.genologics.ri.processtype

Fields in com.genologics.ri.processtype with type parameters of type ClarityFile

Modifier and Type	Field	Description
protected List<ClarityFile>	Parameter.files

Methods in com.genologics.ri.processtype that return types with arguments of type ClarityFile

Modifier and Type	Method	Description
List<ClarityFile>	Parameter.getFiles()	Each File provides a URI linking to the detailed representation of a File associated with the Process Parameter.

Uses of ClarityFile in com.genologics.ri.project

Fields in com.genologics.ri.project with type parameters of type ClarityFile

Modifier and Type	Field	Description
protected List<ClarityFile>	Project.files

Methods in com.genologics.ri.project that return ClarityFile

Modifier and Type	Method	Description
ClarityFile	Project.addFile(ClarityFile f)

Methods in com.genologics.ri.project that return types with arguments of type ClarityFile

Modifier and Type	Method	Description
List<ClarityFile>	Project.getFiles()

Methods in com.genologics.ri.project with parameters of type ClarityFile

Modifier and Type	Method	Description
ClarityFile	Project.addFile(ClarityFile f)

Uses of ClarityFile in com.genologics.ri.sample

Fields in com.genologics.ri.sample with type parameters of type ClarityFile

Modifier and Type	Field	Description
protected List<ClarityFile>	SampleBase.files

Methods in com.genologics.ri.sample that return ClarityFile

Modifier and Type	Method	Description
ClarityFile	SampleBase.addFile(ClarityFile f)

Methods in com.genologics.ri.sample that return types with arguments of type ClarityFile

Modifier and Type	Method	Description
List<ClarityFile>	SampleBase.getFiles()

Methods in com.genologics.ri.sample with parameters of type ClarityFile

Modifier and Type	Method	Description
ClarityFile	SampleBase.addFile(ClarityFile f)

Uses of ClarityFile in org.cruk.clarity.api

Methods in org.cruk.clarity.api that return ClarityFile

Modifier and Type	Method	Description
<E extends LimsEntity<E>> ClarityFile	ClarityAPI.uploadFile(LimsEntityLinkable<E> entity, URL fileURL, boolean publishInLablink)	Attach a file to an entity and upload that file to the file store.

Method parameters in org.cruk.clarity.api with type arguments of type ClarityFile

Modifier and Type	Method	Description
void	ClarityAPI.deleteAndRemoveFile(Linkable<ClarityFile> file)	Delete a file from the file store and remove its record from the LIMS.
void	ClarityAPI.downloadFile(Linkable<ClarityFile> file, OutputStream resultStream)	Download the given file from its source.

Uses of ClarityFile in org.cruk.clarity.api.cache

Methods in org.cruk.clarity.api.cache that return ClarityFile

Modifier and Type	Method	Description
ClarityFile	ClarityAPICache.uploadFile(ProceedingJoinPoint pjp)	Join point for the ClarityAPI.uploadFile method.

Uses of ClarityFile in org.cruk.clarity.api.impl

Methods in org.cruk.clarity.api.impl that return ClarityFile

Modifier and Type	Method	Description
<E extends LimsEntity<E>> ClarityFile	ClarityAPIImpl.uploadFile(LimsEntityLinkable<E> entity, URL fileURL, boolean publishInLablink)	Attach a file to an entity and upload that file to the file store.

Methods in org.cruk.clarity.api.impl with parameters of type ClarityFile

Modifier and Type	Method	Description
protected void	ClarityAPIImpl.uploadViaHTTP(URLInputStreamResource fileURLResource, ClarityFile targetFile)	Upload a file to the Clarity file store.
protected void	ClarityAPIImpl.uploadViaSFTP(URLInputStreamResource fileURLResource, ClarityFile targetFile)	Upload a file to the Clarity file store.

Method parameters in org.cruk.clarity.api.impl with type arguments of type ClarityFile

Modifier and Type	Method	Description
void	ClarityAPIImpl.deleteAndRemoveFile(Linkable<ClarityFile> file)	Delete a file from the file store and remove its record from the LIMS.
void	ClarityAPIImpl.downloadFile(Linkable<ClarityFile> file, OutputStream resultStream)	Download the given file from its source.