Deprecated API

Contents

• Classes
• Fields
• Methods

Deprecated Classes

Class	Description
com.genologics.ri.containertype.CalibrantWell	This type is no longer supported.
com.genologics.ri.sample.BioSource	Biosource is not supported in Clarity.

Deprecated Fields

Field	Description
com.genologics.ri.containertype.ContainerType.calibrantWells
com.genologics.ri.processtype.Parameter.file
com.genologics.ri.processtype.Parameter.invocationType
com.genologics.ri.processtype.Parameter.runProgramPerEvent
com.genologics.ri.processtype.ProcessInput.removeWorkingFlag
com.genologics.ri.processtype.ProcessOutput.assignWorkingFlag
com.genologics.ri.processtype.ProcessOutput.fieldDefinitions
com.genologics.ri.processtype.ProcessType.fieldDefinitions
com.genologics.ri.researcher.Role.roleName	Deprecated from version 2.19.
com.genologics.ri.sample.SampleBase.bioSource
com.genologics.ri.stepconfiguration.ProtocolStep.defaultGrouping

Deprecated Methods

Method	Description
com.genologics.ri.containertype.ContainerType.getCalibrantWells()	This property is no longer supported and will be ignored if provided.
com.genologics.ri.containertype.ObjectFactory.createCalibrantWell()
com.genologics.ri.processtype.Parameter.getFile()	This property is no longer supported.
com.genologics.ri.processtype.Parameter.getInvocationType()	This property is no longer supported.
com.genologics.ri.processtype.Parameter.isRunProgramPerEvent()	This property is no longer supported.
com.genologics.ri.processtype.Parameter.setFile(String)
com.genologics.ri.processtype.Parameter.setInvocationType(InvocationType)
com.genologics.ri.processtype.Parameter.setRunProgramPerEvent(Boolean)
com.genologics.ri.processtype.ProcessInput.isRemoveWorkingFlag()	This property is no longer supported.
com.genologics.ri.processtype.ProcessInput.setRemoveWorkingFlag(Boolean)
com.genologics.ri.processtype.ProcessOutput.getFieldDefinitions()	These field definitions are ignored as of Clarity LIMS 5.0.
com.genologics.ri.processtype.ProcessOutput.isAssignWorkingFlag()	This property is no longer supported.
com.genologics.ri.processtype.ProcessOutput.setAssignWorkingFlag(Boolean)
com.genologics.ri.processtype.ProcessType.getFieldDefinitions()	These field definitions are ignored as of Clarity LIMS 5.0.
com.genologics.ri.researcher.Role.getRoleName()	Deprecated from version 2.19.
com.genologics.ri.researcher.Role.setRoleName(String)	Deprecated from version 2.19.
com.genologics.ri.sample.ObjectFactory.createBiosource()
com.genologics.ri.sample.SampleBase.getBioSource()
com.genologics.ri.sample.SampleBase.setBioSource(BioSource)
com.genologics.ri.stepconfiguration.ProtocolStep.getDefaultGrouping()	Please use "<milestone>DefaultGrouping" (for example, "queueDefaultGrouping") in a StepProperty field instead.
com.genologics.ri.stepconfiguration.ProtocolStep.setDefaultGrouping(GenericTypeLink)
org.cruk.clarity.api.ClarityAPI.getServer()	Use ClarityAPI.getServerURI() to get the URI instead.
org.cruk.clarity.api.ClarityAPI.setServer(URL)	Use ClarityAPI.setServerURI(URI) to set the URI instead.
org.cruk.clarity.api.impl.ClarityAPIImpl.getServer()
org.cruk.clarity.api.impl.ClarityAPIImpl.setServer(URL)