Uses of Annotation Interface
com.genologics.ri.ClarityEntity

Packages that use ClarityEntity

Package	Description
com.genologics.ri.artifact	Provides JAXB bindings for artifacts in the Genologics REST API.
com.genologics.ri.artifactgroup	Entities for artifact groups in the Clarity system.
com.genologics.ri.automation	Entities for automation resources in the Clarity system.
com.genologics.ri.configuration	Entities for system configuration in the Clarity system.
com.genologics.ri.container	Container entity and support classes for the Clarity REST API.
com.genologics.ri.containertype	Entities for container type definitions in the Clarity system.
com.genologics.ri.controltype	Entities for control types in the Clarity LIMS system.
com.genologics.ri.file	Entities for file resources in the Clarity system.
com.genologics.ri.instrument	Entities for instrument resources in the Clarity system.
com.genologics.ri.instrumenttype	Entities for instrument type definitions in the Clarity system.
com.genologics.ri.lab	Provides classes for representing and managing laboratory entities in the Clarity LIMS system.
com.genologics.ri.permission	Entities for user permissions in the Clarity system.
com.genologics.ri.process	Entities for processes executed in the Clarity system.
com.genologics.ri.processtemplate	Entities for process templates in the Clarity system.
com.genologics.ri.processtype	Entities for process type definitions in the Clarity system.
com.genologics.ri.project	Project entity and supporting classes for the Clarity REST API.
com.genologics.ri.protocolconfiguration	Provides JAXB bindings for the protocol configuration domain model.
com.genologics.ri.queue	Entities for work queues in the Clarity system.
com.genologics.ri.reagentkit	Provides JAXB binding classes for the Clarity REST API reagent kit entity and its related components.
com.genologics.ri.reagentlot
com.genologics.ri.reagenttype	Entities for reagent type definitions in the Clarity system.
com.genologics.ri.researcher	Provides classes for representing researchers in the Clarity LIMS system.
com.genologics.ri.role	Provides JAXB binding classes for the Clarity REST API role entity and its related components.
com.genologics.ri.sample	Provides classes for sample entities in the Clarity LIMS API.
com.genologics.ri.savedquery	Entities for saved queries in the Clarity system.
com.genologics.ri.stage	Entities for workflow stages in the Clarity system.
com.genologics.ri.step	Entities for workflow steps in the Clarity system.
com.genologics.ri.stepconfiguration	Entities for step configuration in the Clarity system.
com.genologics.ri.workflowconfiguration	Entities for workflow configuration in the Clarity system.
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.

Uses of ClarityEntity in com.genologics.ri.artifact

Classes in com.genologics.ri.artifact with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Artifact	The detailed representation of an Artifact.
class	Demux	The detailed representation of the demultiplexing of a pooled artifact.

Uses of ClarityEntity in com.genologics.ri.artifactgroup

Classes in com.genologics.ri.artifactgroup with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ArtifactGroup	ArtifactGroups are created by the Lab Scientist interface for each workflow.

Uses of ClarityEntity in com.genologics.ri.automation

Classes in com.genologics.ri.automation with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Automation	The automation element integrates the process with the Automation Worker (previously called External Program Plugin or EPP).

Uses of ClarityEntity in com.genologics.ri.configuration

Classes in com.genologics.ri.configuration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Field	The detailed representation of the configuration of a user-defined field.
class	FieldDynamicPresetDetails	The representation of a list of field dynamic UDF preset.
class	Type	The detailed representation of the configuration of a user defined type.

Uses of ClarityEntity in com.genologics.ri.container

Classes in com.genologics.ri.container with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Container	Container entity representing a physical container in the Clarity LIMS.

Uses of ClarityEntity in com.genologics.ri.containertype

Classes in com.genologics.ri.containertype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ContainerType	The detailed representation of a container type.

Uses of ClarityEntity in com.genologics.ri.controltype

Classes in com.genologics.ri.controltype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ControlType	Represents a control type in the Clarity LIMS system.

Uses of ClarityEntity in com.genologics.ri.file

Classes in com.genologics.ri.file with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ClarityFile	The file element contains information about a file in the system.

Uses of ClarityEntity in com.genologics.ri.instrument

Classes in com.genologics.ri.instrument with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Instrument	The detailed representation of an instrument.

Uses of ClarityEntity in com.genologics.ri.instrumenttype

Classes in com.genologics.ri.instrumenttype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	InstrumentType	An instrument describes properties common to all instruments of that type.

Uses of ClarityEntity in com.genologics.ri.lab

Classes in com.genologics.ri.lab with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Lab	The detailed representation of a lab.

Uses of ClarityEntity in com.genologics.ri.permission

Classes in com.genologics.ri.permission with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Permission	The detailed representation of a permission.

Uses of ClarityEntity in com.genologics.ri.process

Classes in com.genologics.ri.process with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ClarityProcess	The detailed representation of a process.

Uses of ClarityEntity in com.genologics.ri.processtemplate

Classes in com.genologics.ri.processtemplate with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ProcessTemplate	The detailed representation of a Process Template.

Uses of ClarityEntity in com.genologics.ri.processtype

Classes in com.genologics.ri.processtype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ProcessType	The process-type element contains the XML representation of a type of process configured in the system.

Uses of ClarityEntity in com.genologics.ri.project

Classes in com.genologics.ri.project with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Project	The detailed representation of a Project.

Uses of ClarityEntity in com.genologics.ri.protocolconfiguration

Classes in com.genologics.ri.protocolconfiguration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Protocol	Detailed representation of a protocol.

Uses of ClarityEntity in com.genologics.ri.queue

Classes in com.genologics.ri.queue with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Queue	The representation of a queue.

Uses of ClarityEntity in com.genologics.ri.reagentkit

Classes in com.genologics.ri.reagentkit with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ReagentKit	The detailed representation of a reagent kit.

Uses of ClarityEntity in com.genologics.ri.reagentlot

Classes in com.genologics.ri.reagentlot with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ReagentLot	Represents a reagent lot in the Clarity LIMS system.

Uses of ClarityEntity in com.genologics.ri.reagenttype

Classes in com.genologics.ri.reagenttype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ReagentType	The detailed representation of a reagent type.

Uses of ClarityEntity in com.genologics.ri.researcher

Classes in com.genologics.ri.researcher with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Researcher	The detailed representation of a researcher.

Uses of ClarityEntity in com.genologics.ri.role

Classes in com.genologics.ri.role with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Role	The detailed representation of a Role

Uses of ClarityEntity in com.genologics.ri.sample

Classes in com.genologics.ri.sample with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Sample	The detailed representation of a sample.

Uses of ClarityEntity in com.genologics.ri.savedquery

Classes in com.genologics.ri.savedquery with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	SavedQuery	Represents a saved query in the Clarity LIMS system.

Uses of ClarityEntity in com.genologics.ri.stage

Classes in com.genologics.ri.stage with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Stage	The detailed representation of a workflow stage.

Uses of ClarityEntity in com.genologics.ri.step

Classes in com.genologics.ri.step with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Actions	Represents actions applied or to be applied by a step in the workflow.
class	Arrangements	The detailed representation of a step's output container Tube Rack arrangements only for an Add Label Step.
class	Placements	The detailed representation of a step's output artifact container placements
class	Pools	The detailed representation of a step's pooled inputs.
class	ProcessStep	The detailed representation of a step.
class	ProgramStatus	The current EPP status for a step (supports automatically triggered programs only).
class	ReagentLots	The list representation of a step's reagent lots.
class	Reagents	The detailed representation of a step's output artifact reagents.
class	StepCreation	A request to create a step.
class	StepDetails	Represents the detailed view of a step, including configuration, input/output mappings, user-defined fields, and associated resources.
class	StepSetup	Represents the setup configuration for a step, including files and configuration settings.

Uses of ClarityEntity in com.genologics.ri.stepconfiguration

Classes in com.genologics.ri.stepconfiguration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ProtocolStep	Detailed representation of a Step

Uses of ClarityEntity in com.genologics.ri.workflowconfiguration

Classes in com.genologics.ri.workflowconfiguration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Workflow	The detailed representation of a Workflow.

Uses of ClarityEntity in org.cruk.clarity.api.impl

Methods in org.cruk.clarity.api.impl that return ClarityEntity

Modifier and Type	Method	Description
protected ClarityEntity	ClarityAPIImpl.checkEntityAnnotated(Class<?> entityClass)	Check that the class given as an entity class is annotated with the ClarityEntity annotation.