Uses of Annotation Interface
com.genologics.ri.ClarityEntity

Packages that use ClarityEntity

Package	Description
com.genologics.ri.artifact
com.genologics.ri.artifactgroup
com.genologics.ri.automation
com.genologics.ri.configuration
com.genologics.ri.container
com.genologics.ri.containertype
com.genologics.ri.controltype
com.genologics.ri.file
com.genologics.ri.instrument
com.genologics.ri.instrumenttype
com.genologics.ri.lab
com.genologics.ri.permission
com.genologics.ri.process
com.genologics.ri.processtemplate
com.genologics.ri.processtype
com.genologics.ri.project
com.genologics.ri.protocolconfiguration
com.genologics.ri.queue
com.genologics.ri.reagentkit
com.genologics.ri.reagentlot
com.genologics.ri.reagenttype
com.genologics.ri.researcher
com.genologics.ri.role
com.genologics.ri.sample
com.genologics.ri.stage
com.genologics.ri.step
com.genologics.ri.stepconfiguration
com.genologics.ri.workflowconfiguration
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.

Uses of ClarityEntity in com.genologics.ri.artifact

Classes in com.genologics.ri.artifact with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Artifact	The detailed representation of an Artifact.
class	Demux	The detailed representation of the demultiplexing of a pooled artifact.

Uses of ClarityEntity in com.genologics.ri.artifactgroup

Classes in com.genologics.ri.artifactgroup with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ArtifactGroup	ArtifactGroups are created by the Lab Scientist interface for each workflow.

Uses of ClarityEntity in com.genologics.ri.automation

Classes in com.genologics.ri.automation with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Automation	The automation element integrates the process with the Automation Worker (previously called External Program Plugin or EPP).

Uses of ClarityEntity in com.genologics.ri.configuration

Classes in com.genologics.ri.configuration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Field	The detailed representation of the configuration of a user-defined field.
class	Type	The detailed representation of the configuration of a user defined type.

Uses of ClarityEntity in com.genologics.ri.container

Classes in com.genologics.ri.container with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Container

Uses of ClarityEntity in com.genologics.ri.containertype

Classes in com.genologics.ri.containertype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ContainerType	The detailed representation of a container type.

Uses of ClarityEntity in com.genologics.ri.controltype

Classes in com.genologics.ri.controltype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ControlType

Uses of ClarityEntity in com.genologics.ri.file

Classes in com.genologics.ri.file with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ClarityFile	The file element contains information about a file in the system.

Uses of ClarityEntity in com.genologics.ri.instrument

Classes in com.genologics.ri.instrument with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Instrument	The detailed representation of an instrument.

Uses of ClarityEntity in com.genologics.ri.instrumenttype

Classes in com.genologics.ri.instrumenttype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	InstrumentType	An instrument describes properties common to all instruments of that type.

Uses of ClarityEntity in com.genologics.ri.lab

Classes in com.genologics.ri.lab with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Lab	The detailed representation of a lab.

Uses of ClarityEntity in com.genologics.ri.permission

Classes in com.genologics.ri.permission with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Permission

Uses of ClarityEntity in com.genologics.ri.process

Classes in com.genologics.ri.process with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ClarityProcess	The detailed representation of a process.

Uses of ClarityEntity in com.genologics.ri.processtemplate

Classes in com.genologics.ri.processtemplate with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ProcessTemplate	The detailed representation of a Process Template.

Uses of ClarityEntity in com.genologics.ri.processtype

Classes in com.genologics.ri.processtype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ProcessType	The process-type element contains the XML representation of a type of process configured in the system.

Uses of ClarityEntity in com.genologics.ri.project

Classes in com.genologics.ri.project with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Project	The detailed representation of a Project.

Uses of ClarityEntity in com.genologics.ri.protocolconfiguration

Classes in com.genologics.ri.protocolconfiguration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Protocol	Detailed representation of a protocol.

Uses of ClarityEntity in com.genologics.ri.queue

Classes in com.genologics.ri.queue with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Queue	The representation of a queue.

Uses of ClarityEntity in com.genologics.ri.reagentkit

Classes in com.genologics.ri.reagentkit with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ReagentKit	The detailed representation of a reagent kit.

Uses of ClarityEntity in com.genologics.ri.reagentlot

Classes in com.genologics.ri.reagentlot with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ReagentLot	The detailed representation of a Reagent Lot

Uses of ClarityEntity in com.genologics.ri.reagenttype

Classes in com.genologics.ri.reagenttype with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ReagentType	The detailed representation of a reagent type.

Uses of ClarityEntity in com.genologics.ri.researcher

Classes in com.genologics.ri.researcher with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Researcher	The detailed representation of a researcher.

Uses of ClarityEntity in com.genologics.ri.role

Classes in com.genologics.ri.role with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Role	The detailed representation of a Role

Uses of ClarityEntity in com.genologics.ri.sample

Classes in com.genologics.ri.sample with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Sample	The detailed representation of a sample.

Uses of ClarityEntity in com.genologics.ri.stage

Classes in com.genologics.ri.stage with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Stage	The detailed representation of a stage.

Uses of ClarityEntity in com.genologics.ri.step

Classes in com.genologics.ri.step with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Actions
class	Placements	The detailed representation of a step's output artifact container placements
class	Pools	The detailed representation of a step's pooled inputs.
class	ProcessStep	The detailed representation of a step.
class	ProgramStatus	The current EPP status for a step (supports automatically triggered programs only).
class	ReagentLots	The list representation of a step's reagent lots.
class	Reagents	The detailed representation of a step's output artifact reagents.
class	StepCreation	A request to create a step.
class	StepDetails
class	StepSetup

Uses of ClarityEntity in com.genologics.ri.stepconfiguration

Classes in com.genologics.ri.stepconfiguration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	ProtocolStep	Detailed representation of a Step

Uses of ClarityEntity in com.genologics.ri.workflowconfiguration

Classes in com.genologics.ri.workflowconfiguration with annotations of type ClarityEntity

Modifier and Type	Class	Description
class	Workflow	The detailed representation of a Workflow.

Uses of ClarityEntity in org.cruk.clarity.api.impl

Methods in org.cruk.clarity.api.impl that return ClarityEntity

Modifier and Type	Method	Description
protected ClarityEntity	ClarityAPIImpl.checkEntityAnnotated(Class<?> entityClass)	Check that the class given as an entity class is annotated with the ClarityEntity annotation.