Uses of Interface
com.genologics.ri.LimsEntityLink

Packages that use LimsEntityLink

Package	Description
com.genologics.ri	The root package of the classes generated (originally) from the Clarity schemas.
com.genologics.ri.artifact	Provides JAXB bindings for artifacts in the Genologics REST API.
com.genologics.ri.container	Container entity and support classes for the Clarity REST API.
com.genologics.ri.file	Entities for file resources in the Clarity system.
com.genologics.ri.instrument	Entities for instrument resources in the Clarity system.
com.genologics.ri.lab	Provides classes for representing and managing laboratory entities in the Clarity LIMS system.
com.genologics.ri.process	Entities for processes executed in the Clarity system.
com.genologics.ri.processexecution	Entities for process execution in the Clarity system.
com.genologics.ri.processtemplate	Entities for process templates in the Clarity system.
com.genologics.ri.project	Project entity and supporting classes for the Clarity REST API.
com.genologics.ri.queue	Entities for work queues in the Clarity system.
com.genologics.ri.reagentlot
com.genologics.ri.reagenttype	Entities for reagent type definitions in the Clarity system.
com.genologics.ri.researcher	Provides classes for representing researchers in the Clarity LIMS system.
com.genologics.ri.role	Provides JAXB binding classes for the Clarity REST API role entity and its related components.
com.genologics.ri.sample	Provides classes for sample entities in the Clarity LIMS API.
com.genologics.ri.step	Entities for workflow steps in the Clarity system.
org.cruk.clarity.api	The main public package of the Clarity API.
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.

Uses of LimsEntityLink in com.genologics.ri

Classes in com.genologics.ri that implement LimsEntityLink

Modifier and Type	Class	Description
class	ContainerLink	Container is a child element of location and provides a URI linking to the detailed representation of the Container for the location.
class	LimsEntityLinkBase<E extends LimsEntity<E>>	Helper base class for LimsEntityLink implementations extending from LimsLinkBase.
class	Location	Location provides a URI linking to the detailed representation of a Container along with the well location within that Container.

Methods in com.genologics.ri that return LimsEntityLink

Modifier and Type	Method	Description
default LimsEntityLink<E>	LimsEntityLink.getLink()	Since anything implementing this interface is already an entity link, this default implementation will just return itself.
LimsEntityLink<E>	LimsEntityLinkable.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.artifact

Classes in com.genologics.ri.artifact that implement LimsEntityLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact-link is a child element type of artifacts and provides a URI linking to the detailed representation of an artifact.
class	DemuxArtifactSample	The details of a sample that is part of a pooled artifact.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the detailed representation of the process that produced the Artifact.
class	SampleLink	Sample is a child element of Artifact and provides a URI linking to the detailed representation of a submitted Sample for the Artifact.

Methods in com.genologics.ri.artifact that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Artifact>	Artifact.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.container

Classes in com.genologics.ri.container that implement LimsEntityLink

Modifier and Type	Class	Description
class	ContainerLink	Container-link is a child element type of containers and provides a URI linking to the detailed representation of a container.
class	Placement	Placement is a child element of container and provides a URI linking to the detailed representation of the artifact that is located in a specific well of the container.

Methods in com.genologics.ri.container that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Container>	Container.getLink()	Gets a link to this container.

Uses of LimsEntityLink in com.genologics.ri.file

Classes in com.genologics.ri.file that implement LimsEntityLink

Modifier and Type	Class	Description
class	ClarityFile	The file element contains information about a file in the system.

Uses of LimsEntityLink in com.genologics.ri.instrument

Classes in com.genologics.ri.instrument that implement LimsEntityLink

Modifier and Type	Class	Description
class	InstrumentLink	Instrument-link is a child element type of instruments and provides a URI linking to the detailed representation of an instrument.

Methods in com.genologics.ri.instrument that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Instrument>	Instrument.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.lab

Classes in com.genologics.ri.lab that implement LimsEntityLink

Modifier and Type	Class	Description
class	LabLink	Lab-link is a child element type of labs and provides a URI linking to the detailed representation of a lab.

Methods in com.genologics.ri.lab that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Lab>	Lab.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.process

Classes in com.genologics.ri.process that implement LimsEntityLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Process for the input-output-map.
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the Process that created the Artifact.
class	ProcessLink	Process-link is a child element type of process and provides a URI linking to the detailed representation of a process.

Methods in com.genologics.ri.process that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<ClarityProcess>	ClarityProcess.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.processexecution

Classes in com.genologics.ri.processexecution that implement LimsEntityLink

Modifier and Type	Class	Description
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.

Uses of LimsEntityLink in com.genologics.ri.processtemplate

Classes in com.genologics.ri.processtemplate that implement LimsEntityLink

Modifier and Type	Class	Description
class	InstrumentLink	The instrument is a child element of process-template that provides a URI to the instrument that is responsible for running a Process created using this Process Template.

Uses of LimsEntityLink in com.genologics.ri.project

Classes in com.genologics.ri.project that implement LimsEntityLink

Modifier and Type	Class	Description
class	ProjectLink	Project-link is a child element type of projects and provides a URI linking to the detailed representation of a project.
class	ResearcherLink	Researcher is a child element of Project and provides a URI linking to the detailed representation of the Researcher for the Project.

Methods in com.genologics.ri.project that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Project>	Project.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.queue

Classes in com.genologics.ri.queue that implement LimsEntityLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact-Link provides a URI linking to the detailed representation of an artifact in a queue.

Uses of LimsEntityLink in com.genologics.ri.reagentlot

Classes in com.genologics.ri.reagentlot that implement LimsEntityLink

Modifier and Type	Class	Description
class	ReagentLotLink	Reagent-lot-link is a child element type of Reagent Lots and provides a URI linking to the detailed representation of a Reagent Lot.
class	ResearcherLink	Researcher is a child element of the reagent lot.

Methods in com.genologics.ri.reagentlot that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<ReagentLot>	ReagentLot.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.reagenttype

Classes in com.genologics.ri.reagenttype that implement LimsEntityLink

Modifier and Type	Class	Description
class	ReagentTypeLink	Reagent-type-link is a child element type of reagent types and provides a URI linking to the detailed representation of a reagent type.

Methods in com.genologics.ri.reagenttype that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<ReagentType>	ReagentType.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.researcher

Classes in com.genologics.ri.researcher that implement LimsEntityLink

Modifier and Type	Class	Description
class	LabLink	Lab is a child element of researcher and provides a URI linking to the detailed representation of the lab for the researcher.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.

Methods in com.genologics.ri.researcher that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Researcher>	Researcher.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.role

Classes in com.genologics.ri.role that implement LimsEntityLink

Modifier and Type	Class	Description
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.

Uses of LimsEntityLink in com.genologics.ri.sample

Classes in com.genologics.ri.sample that implement LimsEntityLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of Sample and provides a URI linking to the detailed representation of the artifact for the Sample.
class	ProjectLink	Project is a child element of Sample and provides a URI linking to the detailed representation of the Project for the Sample.
class	SampleLink	Sample-link is a child element type of samples and provides a URI linking to the detailed representation of a sample.

Methods in com.genologics.ri.sample that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<Sample>	Sample.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in com.genologics.ri.step

Classes in com.genologics.ri.step that implement LimsEntityLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Step for the input-output-map.
class	InstrumentLink	The instrument element provides a URI to the selected instrument for the step.
class	ReagentLotLink	Provides a URI linking to the reagent lot details.
class	SharedResultFile	The file element describes a shared result file output that will be displayed in the step-setup view.

Methods in com.genologics.ri.step that return LimsEntityLink

Modifier and Type	Method	Description
LimsEntityLink<ProcessStep>	ProcessStep.getLink()	Get a concrete link object to this LimsEntityLinkable entity.

Uses of LimsEntityLink in org.cruk.clarity.api

Methods in org.cruk.clarity.api that return types with arguments of type LimsEntityLink

Modifier and Type	Method	Description
List<LimsEntityLink<Artifact>>	ClarityAPI.listQueue(Linkable<ProtocolStep> protocolStep)	List the artifacts in the queue for the given protocol step.
List<LimsEntityLink<Artifact>>	ClarityAPI.listQueue(Linkable<ProtocolStep> protocolStep, Map<String,?> searchTerms)	List the artifacts in the queue for the given protocol step, additionally filtering using the parameters available for the "queues" end point.

Uses of LimsEntityLink in org.cruk.clarity.api.impl

Methods in org.cruk.clarity.api.impl that return types with arguments of type LimsEntityLink

Modifier and Type	Method	Description
List<LimsEntityLink<Artifact>>	ClarityAPIImpl.listQueue(Linkable<ProtocolStep> protocolStep)	List the artifacts in the queue for the given protocol step.
List<LimsEntityLink<Artifact>>	ClarityAPIImpl.listQueue(Linkable<ProtocolStep> protocolStep, Map<String,?> searchTerms)	List the artifacts in the queue for the given protocol step, additionally filtering using the parameters available for the "queues" end point.