Uses of Interface
com.genologics.ri.LimsLink

Packages that use LimsLink

Package	Description
com.genologics.ri	The root package of the classes generated (originally) from the Clarity schemas.
com.genologics.ri.artifact	Provides JAXB bindings for artifacts in the Genologics REST API.
com.genologics.ri.artifactgroup	Entities for artifact groups in the Clarity system.
com.genologics.ri.automation	Entities for automation resources in the Clarity system.
com.genologics.ri.configuration	Entities for system configuration in the Clarity system.
com.genologics.ri.container	Container entity and support classes for the Clarity REST API.
com.genologics.ri.containertype	Entities for container type definitions in the Clarity system.
com.genologics.ri.controltype	Entities for control types in the Clarity LIMS system.
com.genologics.ri.file	Entities for file resources in the Clarity system.
com.genologics.ri.globaltoken	Illumina have said that the types in this package are not actually released, and there's nothing in Clarity that uses them.
com.genologics.ri.instrument	Entities for instrument resources in the Clarity system.
com.genologics.ri.instrumenttype	Entities for instrument type definitions in the Clarity system.
com.genologics.ri.lab	Provides classes for representing and managing laboratory entities in the Clarity LIMS system.
com.genologics.ri.permission	Entities for user permissions in the Clarity system.
com.genologics.ri.process	Entities for processes executed in the Clarity system.
com.genologics.ri.processexecution	Entities for process execution in the Clarity system.
com.genologics.ri.processtemplate	Entities for process templates in the Clarity system.
com.genologics.ri.processtype	Entities for process type definitions in the Clarity system.
com.genologics.ri.project	Project entity and supporting classes for the Clarity REST API.
com.genologics.ri.protocolconfiguration	Provides JAXB bindings for the protocol configuration domain model.
com.genologics.ri.queue	Entities for work queues in the Clarity system.
com.genologics.ri.reagentkit	Provides JAXB binding classes for the Clarity REST API reagent kit entity and its related components.
com.genologics.ri.reagentlot
com.genologics.ri.reagenttype	Entities for reagent type definitions in the Clarity system.
com.genologics.ri.researcher	Provides classes for representing researchers in the Clarity LIMS system.
com.genologics.ri.role	Provides JAXB binding classes for the Clarity REST API role entity and its related components.
com.genologics.ri.routing	Provides JAXB binding classes for the Clarity REST API routing entity and its related components.
com.genologics.ri.sample	Provides classes for sample entities in the Clarity LIMS API.
com.genologics.ri.savedquery	Entities for saved queries in the Clarity system.
com.genologics.ri.stage	Entities for workflow stages in the Clarity system.
com.genologics.ri.step	Entities for workflow steps in the Clarity system.
com.genologics.ri.stepconfiguration	Entities for step configuration in the Clarity system.
com.genologics.ri.workflowconfiguration	Entities for workflow configuration in the Clarity system.
org.cruk.clarity.api	The main public package of the Clarity API.
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.
org.cruk.clarity.api.playback	The classes necessary to replay server calls from entity XML files on disk.
org.cruk.clarity.api.record	The classes necessary to record entities returned from a Clarity server to XML files on disk.
org.cruk.clarity.api.search	Classes supporting the recording of searches for record and playback.
org.cruk.clarity.api.search.internal	Internal classes for the implementation of storing and retrieving searches.

Uses of LimsLink in com.genologics.ri

Subinterfaces of LimsLink in com.genologics.ri

Modifier and Type	Interface	Description
interface	LimsEntityLink<E extends LimsEntity<E>>	Interface for links to LimsEntity objects.

Classes in com.genologics.ri that implement LimsLink

Modifier and Type	Class	Description
class	ContainerLink	Container is a child element of location and provides a URI linking to the detailed representation of the Container for the location.
class	LimsEntityLinkBase<E extends LimsEntity<E>>	Helper base class for LimsEntityLink implementations extending from LimsLinkBase.
class	LimsLinkBase<E extends Locatable>	Helper base class for LimsLink implementations that implements LimsLinkBase.hashCode() and LimsLinkBase.equals(Object) to consider links that point to the same entities as equivalent.
class	Location	Location provides a URI linking to the detailed representation of a Container along with the well location within that Container.

Methods in com.genologics.ri that return LimsLink

Modifier and Type	Method	Description
default LimsLink<E>	LimsLink.getLink()	Since anything implementing this interface is already a link, this default implementation will just return itself.
LimsLink<E>	Linkable.getLink()	Get a concrete link object to this Linkable thing.

Methods in com.genologics.ri with parameters of type LimsLink

Modifier and Type	Method	Description
static boolean	LimsLink.equals(LimsLink<?> link, Object obj)	Test a LimsLink against another object for equivalence.
static int	LimsLink.hashCode(LimsLink<?> link)	Calculate a hash code for the given link.
static String	LimsLink.toString(LimsLink<?> link)	An implementation of toString() for links.

Uses of LimsLink in com.genologics.ri.artifact

Classes in com.genologics.ri.artifact that implement LimsLink

Modifier and Type	Class	Description
class	ArtifactGroupLink	Artifact group is a child element of Artifact and provides a URI linking to the detailed representation of the artifact group that the Artifact belongs to.
class	ArtifactLink	Artifact-link is a child element type of artifacts and provides a URI linking to the detailed representation of an artifact.
class	ControlTypeLink	Provide a URI linking to the control type if this artifact is a control sample.
class	DemuxArtifact	Details of an individual artifact that is part of a pooled artifact.
class	DemuxArtifactSample	The details of a sample that is part of a pooled artifact.
class	DemuxLink	Identifies the resource that will demultiplex this artifact.
class	DemuxSourceArtifact	Link to a source artifact for demultiplexing.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the detailed representation of the process that produced the Artifact.
class	PoolStep	The details of the pooling step that created the pooled sample(s).
class	SampleLink	Sample is a child element of Artifact and provides a URI linking to the detailed representation of a submitted Sample for the Artifact.
class	WorkflowStage	Provides links to workflow stages, stage names and their respective statuses.

Uses of LimsLink in com.genologics.ri.artifactgroup

Classes in com.genologics.ri.artifactgroup that implement LimsLink

Modifier and Type	Class	Description
class	ArtifactGroupLink	artifactGroup-link is a child element type of artifactGroup and provides a URI linking to the detailed representation of a artifactGroup.

Uses of LimsLink in com.genologics.ri.automation

Classes in com.genologics.ri.automation that implement LimsLink

Modifier and Type	Class	Description
class	AutomationLink	A link to an Automation entity.
class	ProcessTypeLink	Provides links to process types the automation is enabled on.

Methods in com.genologics.ri.automation that return LimsLink

Modifier and Type	Method	Description
LimsLink<Automation>	Automation.getLink()	Gets a link to this automation.

Uses of LimsLink in com.genologics.ri.configuration

Classes in com.genologics.ri.configuration that implement LimsLink

Modifier and Type	Class	Description
class	FieldLink	Field definition represents a user-defined field configured in the parent entity.
class	TypeDefinition	Type-definition provides a URI linking to the user defined type associated with the user-defined field, if applicable.
class	UdfConfigLink	Udfconfig-link is a child element type of udfs and provides a URI linking to the detailed representation of the configuration for a user defined field.
class	UdtConfigLink	Udtconfig-link is a child element type of udts and provides a URI linking to the detailed representation of the configuration for a user defined type.

Methods in com.genologics.ri.configuration that return LimsLink

Modifier and Type	Method	Description
LimsLink<Field>	Field.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<Type>	Type.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.container

Classes in com.genologics.ri.container that implement LimsLink

Modifier and Type	Class	Description
class	ContainerLink	Container-link is a child element type of containers and provides a URI linking to the detailed representation of a container.
class	ContainerTypeLink	Container-type is a child element of container and provides a URI linking to the detailed representation of the container type that the container is associated with.
class	Placement	Placement is a child element of container and provides a URI linking to the detailed representation of the artifact that is located in a specific well of the container.

Uses of LimsLink in com.genologics.ri.containertype

Classes in com.genologics.ri.containertype that implement LimsLink

Modifier and Type	Class	Description
class	ContainerTypeLink	Container-type-link is a child element type of containers and provides a URI linking to the detailed representation of a container type.

Methods in com.genologics.ri.containertype that return LimsLink

Modifier and Type	Method	Description
LimsLink<ContainerType>	ContainerType.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.controltype

Classes in com.genologics.ri.controltype that implement LimsLink

Modifier and Type	Class	Description
class	ControlTypeLink	Control-type-link is a child element type of controlTypes and provides a URI linking to the detailed representation of a ControlType.

Methods in com.genologics.ri.controltype that return LimsLink

Modifier and Type	Method	Description
LimsLink<ControlType>	ControlType.getLink()	Gets a link representation of this control type.

Uses of LimsLink in com.genologics.ri.file

Classes in com.genologics.ri.file that implement LimsLink

Modifier and Type	Class	Description
class	ClarityFile	The file element contains information about a file in the system.
class	FileLink	The file-link type provides a URI that links to information about a file in the system.

Uses of LimsLink in com.genologics.ri.globaltoken

Classes in com.genologics.ri.globaltoken that implement LimsLink

Modifier and Type	Class	Description
class	GlobalTokenLink	global-token-link is a child element type of global tokens and provides a URI linking to the detailed representation of a global token.

Methods in com.genologics.ri.globaltoken that return LimsLink

Modifier and Type	Method	Description
LimsLink<GlobalToken>	GlobalToken.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.instrument

Classes in com.genologics.ri.instrument that implement LimsLink

Modifier and Type	Class	Description
class	InstrumentLink	Instrument-link is a child element type of instruments and provides a URI linking to the detailed representation of an instrument.

Uses of LimsLink in com.genologics.ri.instrumenttype

Classes in com.genologics.ri.instrumenttype that implement LimsLink

Modifier and Type	Class	Description
class	InstrumentTypeLink	Instrument-type-link provides a URI linking to the detailed representation of an instrument type.
class	InstrumentTypeProcessType	Process type link for instrument types.

Methods in com.genologics.ri.instrumenttype that return LimsLink

Modifier and Type	Method	Description
LimsLink<InstrumentType>	InstrumentType.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.lab

Classes in com.genologics.ri.lab that implement LimsLink

Modifier and Type	Class	Description
class	LabLink	Lab-link is a child element type of labs and provides a URI linking to the detailed representation of a lab.

Uses of LimsLink in com.genologics.ri.permission

Classes in com.genologics.ri.permission that implement LimsLink

Modifier and Type	Class	Description
class	PermissionLink	Permission-link provides a URI linking to the detailed representation of a permission.

Methods in com.genologics.ri.permission that return LimsLink

Modifier and Type	Method	Description
LimsLink<Permission>	Permission.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.process

Classes in com.genologics.ri.process that implement LimsLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Process for the input-output-map.
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the Process that created the Artifact.
class	ProcessLink	Process-link is a child element type of process and provides a URI linking to the detailed representation of a process.
class	ProcessTypeLink	Process-type is a child element of process that identifies and provides a URI linking to the detailed representation of the process type that the process is associated with.
class	Technician	Technician is a child element of Process and provides a URI linking to the detailed representation of the technician that ran the Process.

Uses of LimsLink in com.genologics.ri.processexecution

Classes in com.genologics.ri.processexecution that implement LimsLink

Modifier and Type	Class	Description
class	Input	The input element provides URIs to one or more Artifacts that will be used by the Process.
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	Technician	The technician element provides a URI to the user that is responsible for the Process.

Uses of LimsLink in com.genologics.ri.processtemplate

Classes in com.genologics.ri.processtemplate that implement LimsLink

Modifier and Type	Class	Description
class	InstrumentLink	The instrument is a child element of process-template that provides a URI to the instrument that is responsible for running a Process created using this Process Template.
class	ProcessTemplateLink	process-template-link is a child element type of Process Templates and provides a URI linking to the detailed representation of a Process Template.
class	ProcessTypeLink	Process-type is a child element of process-template that identifies and provides a URI linking to the detailed representation of the Process Type that the Process Template is associated with.
class	Technician	Technician is a child element of process-template and provides a URI linking to the detailed representation of the technician that is configured to run a Process created using this Process Template.

Methods in com.genologics.ri.processtemplate that return LimsLink

Modifier and Type	Method	Description
LimsLink<ProcessTemplate>	ProcessTemplate.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.processtype

Classes in com.genologics.ri.processtype that implement LimsLink

Modifier and Type	Class	Description
class	ContainerTypeLink	Link to a container type within a process type configuration.
class	ControlTypeLink	Link to a control type within a process type configuration.
class	ProcessTypeLink	Process-type-link is a child element type of process types and provides a URI linking to the detailed representation of a process type.
class	ReagentKitLink	Reagent-kit-link is a child element type of reagentKits and provides a URI linking to the detailed representation of a ReagentKit.
class	TypeDefinition	Type-definition is a child element of process type providing a URI linking to the configuration of a user-defined type for the process type.

Methods in com.genologics.ri.processtype that return LimsLink

Modifier and Type	Method	Description
LimsLink<ProcessType>	ProcessType.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.project

Classes in com.genologics.ri.project that implement LimsLink

Modifier and Type	Class	Description
class	ProjectLink	Project-link is a child element type of projects and provides a URI linking to the detailed representation of a project.
class	ResearcherLink	Researcher is a child element of Project and provides a URI linking to the detailed representation of the Researcher for the Project.

Uses of LimsLink in com.genologics.ri.protocolconfiguration

Classes in com.genologics.ri.protocolconfiguration that implement LimsLink

Modifier and Type	Class	Description
class	ProtocolLink	Link to a protocol configuration.

Methods in com.genologics.ri.protocolconfiguration that return LimsLink

Modifier and Type	Method	Description
LimsLink<Protocol>	Protocol.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.queue

Classes in com.genologics.ri.queue that implement LimsLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact-Link provides a URI linking to the detailed representation of an artifact in a queue.

Uses of LimsLink in com.genologics.ri.reagentkit

Classes in com.genologics.ri.reagentkit that implement LimsLink

Modifier and Type	Class	Description
class	ReagentKitLink	Reagent-Kit-Link is a child element type of reagent kits and provides a URI linking to the detailed representation of a reagent kit.

Methods in com.genologics.ri.reagentkit that return LimsLink

Modifier and Type	Method	Description
LimsLink<ReagentKit>	ReagentKit.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.reagentlot

Classes in com.genologics.ri.reagentlot that implement LimsLink

Modifier and Type	Class	Description
class	ReagentKitLink	Reagent-Kit-Link is an element providing a URI linking to the detailed representation of a reagent kit.
class	ReagentLotLink	Reagent-lot-link is a child element type of Reagent Lots and provides a URI linking to the detailed representation of a Reagent Lot.
class	ResearcherLink	Researcher is a child element of the reagent lot.

Uses of LimsLink in com.genologics.ri.reagenttype

Classes in com.genologics.ri.reagenttype that implement LimsLink

Modifier and Type	Class	Description
class	ReagentTypeLink	Reagent-type-link is a child element type of reagent types and provides a URI linking to the detailed representation of a reagent type.

Uses of LimsLink in com.genologics.ri.researcher

Classes in com.genologics.ri.researcher that implement LimsLink

Modifier and Type	Class	Description
class	LabLink	Lab is a child element of researcher and provides a URI linking to the detailed representation of the lab for the researcher.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.
class	Role	The role element defines a researcher's level of access in the system.

Uses of LimsLink in com.genologics.ri.role

Classes in com.genologics.ri.role that implement LimsLink

Modifier and Type	Class	Description
class	PermissionLink	Permission-link is a child element type of permissions and provides a URI linking to the detailed representation of a Permission.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.
class	RoleLink	Role-link is a child element type of roles and provides a URI linking to the detailed representation of a Role.

Methods in com.genologics.ri.role that return LimsLink

Modifier and Type	Method	Description
LimsLink<Role>	Role.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.routing

Classes in com.genologics.ri.routing that implement LimsLink

Modifier and Type	Class	Description
class	ArtifactLink	Link to an artifact for routing purposes.

Uses of LimsLink in com.genologics.ri.sample

Classes in com.genologics.ri.sample that implement LimsLink

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of Sample and provides a URI linking to the detailed representation of the artifact for the Sample.
class	ControlTypeLink	Control Type provides a name and a URI linking to the detailed representation of the Control Type associated with the Sample.
class	ProjectLink	Project is a child element of Sample and provides a URI linking to the detailed representation of the Project for the Sample.
class	SampleLink	Sample-link is a child element type of samples and provides a URI linking to the detailed representation of a sample.
class	Submitter	Submitter is a child element of Sample and provides a URI linking to the detailed representation of the submitter for the Sample.

Uses of LimsLink in com.genologics.ri.savedquery

Classes in com.genologics.ri.savedquery that implement LimsLink

Modifier and Type	Class	Description
class	SavedQueryLink	Link to a saved query entity.

Methods in com.genologics.ri.savedquery that return LimsLink

Modifier and Type	Method	Description
LimsLink<SavedQuery>	SavedQuery.getLink()	Gets a link to this saved query.

Uses of LimsLink in com.genologics.ri.stage

Classes in com.genologics.ri.stage that implement LimsLink

Modifier and Type	Class	Description
class	ProtocolLink	Protocol link for a stage in a workflow.
class	ProtocolStepLink	Protocol step link for a stage in a workflow.
class	WorkflowLink	Workflow link for a stage.

Methods in com.genologics.ri.stage that return LimsLink

Modifier and Type	Method	Description
LimsLink<Stage>	Stage.getLink()	Gets a link to this stage entity.

Uses of LimsLink in com.genologics.ri.step

Classes in com.genologics.ri.step that implement LimsLink

Modifier and Type	Class	Description
class	ActionsLink	Identifies the resource that represents the actions applied or to be applied by the step.
class	ArrangementsLink	Identifies the resource that represents the arrangements (if any) for the step.
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Step for the input-output-map.
class	AutomaticNextStepLink	Identifies the resource that represents the step that was automatically begun when the "Automatically start Next Step" option is enabled in a step's configuration.
class	ContainerLink	Provides a URI linking to a selected container to be used for placement.
class	CreationInput	Typically, provides a URI linking to the input artifact.
class	EscalatedArtifact	Sample next action or step.
class	Input	Provides input URI links.
class	InstrumentLink	The instrument element provides a URI to the selected instrument for the step.
class	NextAction	Sample next action or step.
class	Output	Provides a URI linking to the output artifact and reagent label.
class	OutputArrangement	Provides a URI linking to the output container and Tube Rack arrangement.
class	OutputPlacement	Provides a URI linking to the output artifact and container placement.
class	PlacementsLink	Identifies the resource that represents the output placements for the step.
class	PoolsLink	Identifies the resource that represents the pools added by the step.
class	ProgramStatusLink	Identifies the resource that represents the program status for the step.
class	ReagentLotLink	Provides a URI linking to the reagent lot details.
class	ReagentLotsLink	Identifies the resource that represents the reagent lots for the step.
class	ReagentsLink	Identifies the resource that represents the reagents added by the step.
class	SharedResultFile	The file element describes a shared result file output that will be displayed in the step-setup view.
class	StepConfiguration	Identifies the configuration information for the step run.
class	StepDetailsLink	Identifies the resource that represents the details for the step.
class	StepSetupLink	Identifies the resource that represents the setup for the step.
class	Technician	Technician is a child element of Step and provides a URI linking to the detailed representation of the technician that ran the Step.
class	UserLink	Describes a user as required in the context of step escalations.

Methods in com.genologics.ri.step that return LimsLink

Modifier and Type	Method	Description
LimsLink<Actions>	Actions.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<Arrangements>	Arrangements.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<Placements>	Placements.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<Pools>	Pools.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<ProgramStatus>	ProgramStatus.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<ReagentLots>	ReagentLots.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<Reagents>	Reagents.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<StepDetails>	StepDetails.getLink()	Get a concrete link object to this Linkable thing.
LimsLink<StepSetup>	StepSetup.getLink()	Get a concrete link object to this Linkable thing.

Constructors in com.genologics.ri.step with parameters of type LimsLink

Modifier	Constructor	Description
	Output(LimsLink<Artifact> link)	Constructor from a LIMS link.

Uses of LimsLink in com.genologics.ri.stepconfiguration

Classes in com.genologics.ri.stepconfiguration that implement LimsLink

Modifier and Type	Class	Description
class	ControlTypeLink	Control-type-link is a child element type of controlTypes and provides a URI linking to the detailed representation of a ControlType.
class	NextStep	List of step transitions including the URI allowing access to the specific next step
class	ProcessTypeLink	Process-type is a child element that provides a URI linking to the detailed representation of the process type that the step is associated with.
class	ReagentKitLink	Reagent-Kit-Link is an element providing a URI linking to the detailed representation of a reagent kit.

Methods in com.genologics.ri.stepconfiguration that return LimsLink

Modifier and Type	Method	Description
LimsLink<ProtocolStep>	ProtocolStep.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in com.genologics.ri.workflowconfiguration

Classes in com.genologics.ri.workflowconfiguration that implement LimsLink

Modifier and Type	Class	Description
class	ProtocolLink	Protocol-link is a child element type of workflow and provides a URI linking to the detailed representation of a protocol.
class	StageLink	The detailed representation of a Stage (the portion of a workflow to which samples can be associated in order to be queued)
class	WorkflowLink	Workflow-link is a child element type of workflows and provides a URI linking to the detailed representation of a workflow.

Methods in com.genologics.ri.workflowconfiguration that return LimsLink

Modifier and Type	Method	Description
LimsLink<Workflow>	Workflow.getLink()	Get a concrete link object to this Linkable thing.

Uses of LimsLink in org.cruk.clarity.api

Methods in org.cruk.clarity.api that return types with arguments of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> List<LimsLink<E>>	ClarityAPI.find(Map<String,?> searchTerms, Class<E> entityClass)	Search for entities of the given type based on name value pairs.
<E extends Locatable> List<LimsLink<E>>	ClarityAPI.listAll(Class<E> entityClass)	List all the objects of the given entity class.
<E extends Locatable> List<LimsLink<E>>	ClarityAPI.listSome(Class<E> entityClass, int startIndex, int number)	List an arbitrary number of objects of the given entity class.

Methods in org.cruk.clarity.api with parameters of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> E	ClarityAPI.load(LimsLink<E> link)	Load an entity using a link to that entity.

Method parameters in org.cruk.clarity.api with type arguments of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> List<E>	ClarityAPI.loadAll(Collection<? extends LimsLink<E>> links)	Fetch a collection of LIMS entities given in the collection.

Uses of LimsLink in org.cruk.clarity.api.impl

Methods in org.cruk.clarity.api.impl with type parameters of type LimsLink

Modifier and Type	Method	Description
protected <E extends Locatable, L extends LimsLink<E>> Class<E>	ClarityAPIImpl.checkLinkCollectionHomogeneousAndUnique(Collection<L> links)	Check that the given collection of links contains no nulls, that each link has a URI, that all links in the collection are links to the same entity class, and that there are no repeated URIs in the collection (ignoring state).
<E extends Locatable, BH extends Batch<? extends LimsLink<E>>> Class<BH>	ClarityAPIImpl.getQueryResultsClassForEntity(Class<E> entityClass)	Get the class that holds a list of links for the given entity when returned from a list or search operation.
<E extends Locatable, BH extends Batch<? extends LimsLink<E>>> Class<BH>	ClarityAPIInternal.getQueryResultsClassForEntity(Class<E> entityClass)	Get the class that holds a list of links for the given entity when returned from a list or search operation.

Methods in org.cruk.clarity.api.impl that return types with arguments of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> List<LimsLink<E>>	ClarityAPIImpl.find(Map<String,?> searchTerms, Class<E> entityClass)	Search for entities of the given type based on name value pairs.
<E extends Locatable> List<LimsLink<E>>	ClarityAPIImpl.listAll(Class<E> entityClass)	List all the objects of the given entity class.
<E extends Locatable> List<LimsLink<E>>	ClarityAPIImpl.listSome(Class<E> entityClass, int startIndex, int number)	List an arbitrary number of objects of the given entity class.

Methods in org.cruk.clarity.api.impl with parameters of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> E	ClarityAPIImpl.load(LimsLink<E> link)	Load an entity using a link to that entity.

Method parameters in org.cruk.clarity.api.impl with type arguments of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> List<E>	ClarityAPIImpl.loadAll(Collection<? extends LimsLink<E>> links)	Fetch a collection of LIMS entities given in the collection.

Uses of LimsLink in org.cruk.clarity.api.playback

Methods in org.cruk.clarity.api.playback with type parameters of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable, L extends LimsLink<E>, BH extends Batch<L>> List<L>	ClarityAPIPlaybackAspect.doList(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the listAll and listSome methods load the list of links from a serialised Batch object in XML file in the messages directory.

Methods in org.cruk.clarity.api.playback that return types with arguments of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> List<LimsLink<E>>	ClarityAPIPlaybackAspect.doFind(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the Clarity client's find() method.

Uses of LimsLink in org.cruk.clarity.api.record

Methods in org.cruk.clarity.api.record with type parameters of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable, L extends LimsLink<E>, BH extends Batch<L>> List<L>	ClarityAPIRecordingAspect.doList(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the listAll and listSome methods that recreate the Batch object that holds the list of links to the real things and writes that list to an XML file in the messages directory.

Methods in org.cruk.clarity.api.record that return types with arguments of type LimsLink

Modifier and Type	Method	Description
<E extends Locatable> List<LimsLink<E>>	ClarityAPIRecordingAspect.doFind(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the Clarity client's find() method.

Uses of LimsLink in org.cruk.clarity.api.search

Methods in org.cruk.clarity.api.search that return types with arguments of type LimsLink

Modifier and Type	Method	Description
List<LimsLink<E>>	Search.getResults()	Get the results of the search.

Method parameters in org.cruk.clarity.api.search with type arguments of type LimsLink

Modifier and Type	Method	Description
void	Search.setResults(List<LimsLink<E>> results)	Set the results of the search.

Uses of LimsLink in org.cruk.clarity.api.search.internal

Methods in org.cruk.clarity.api.search.internal that return LimsLink

Modifier and Type	Method	Description
LimsLink<?>	LimsLinkAdapter.unmarshal(Object v)	Converts an XML object to a LimsLink object during unmarshalling.

Methods in org.cruk.clarity.api.search.internal with parameters of type LimsLink

Modifier and Type	Method	Description
Object	LimsLinkAdapter.marshal(LimsLink<?> v)	Converts a LimsLink object to an XML-compatible object during marshalling.