Uses of Class
com.genologics.ri.LimsLinkBase

Packages that use LimsLinkBase

Package	Description
com.genologics.ri	The root package of the classes generated (originally) from the Clarity schemas.
com.genologics.ri.artifact	Provides JAXB bindings for artifacts in the Genologics REST API.
com.genologics.ri.artifactgroup	Entities for artifact groups in the Clarity system.
com.genologics.ri.automation	Entities for automation resources in the Clarity system.
com.genologics.ri.configuration	Entities for system configuration in the Clarity system.
com.genologics.ri.container	Container entity and support classes for the Clarity REST API.
com.genologics.ri.containertype	Entities for container type definitions in the Clarity system.
com.genologics.ri.controltype	Entities for control types in the Clarity LIMS system.
com.genologics.ri.file	Entities for file resources in the Clarity system.
com.genologics.ri.globaltoken	Illumina have said that the types in this package are not actually released, and there's nothing in Clarity that uses them.
com.genologics.ri.instrument	Entities for instrument resources in the Clarity system.
com.genologics.ri.instrumenttype	Entities for instrument type definitions in the Clarity system.
com.genologics.ri.lab	Provides classes for representing and managing laboratory entities in the Clarity LIMS system.
com.genologics.ri.permission	Entities for user permissions in the Clarity system.
com.genologics.ri.process	Entities for processes executed in the Clarity system.
com.genologics.ri.processexecution	Entities for process execution in the Clarity system.
com.genologics.ri.processtemplate	Entities for process templates in the Clarity system.
com.genologics.ri.processtype	Entities for process type definitions in the Clarity system.
com.genologics.ri.project	Project entity and supporting classes for the Clarity REST API.
com.genologics.ri.protocolconfiguration	Provides JAXB bindings for the protocol configuration domain model.
com.genologics.ri.queue	Entities for work queues in the Clarity system.
com.genologics.ri.reagentkit	Provides JAXB binding classes for the Clarity REST API reagent kit entity and its related components.
com.genologics.ri.reagentlot
com.genologics.ri.reagenttype	Entities for reagent type definitions in the Clarity system.
com.genologics.ri.researcher	Provides classes for representing researchers in the Clarity LIMS system.
com.genologics.ri.role	Provides JAXB binding classes for the Clarity REST API role entity and its related components.
com.genologics.ri.routing	Provides JAXB binding classes for the Clarity REST API routing entity and its related components.
com.genologics.ri.sample	Provides classes for sample entities in the Clarity LIMS API.
com.genologics.ri.savedquery	Entities for saved queries in the Clarity system.
com.genologics.ri.stage	Entities for workflow stages in the Clarity system.
com.genologics.ri.step	Entities for workflow steps in the Clarity system.
com.genologics.ri.stepconfiguration	Entities for step configuration in the Clarity system.
com.genologics.ri.workflowconfiguration	Entities for workflow configuration in the Clarity system.

Uses of LimsLinkBase in com.genologics.ri

Subclasses of LimsLinkBase in com.genologics.ri

Modifier and Type	Class	Description
class	ContainerLink	Container is a child element of location and provides a URI linking to the detailed representation of the Container for the location.
class	LimsEntityLinkBase<E extends LimsEntity<E>>	Helper base class for LimsEntityLink implementations extending from LimsLinkBase.
class	Location	Location provides a URI linking to the detailed representation of a Container along with the well location within that Container.

Uses of LimsLinkBase in com.genologics.ri.artifact

Subclasses of LimsLinkBase in com.genologics.ri.artifact

Modifier and Type	Class	Description
class	ArtifactGroupLink	Artifact group is a child element of Artifact and provides a URI linking to the detailed representation of the artifact group that the Artifact belongs to.
class	ArtifactLink	Artifact-link is a child element type of artifacts and provides a URI linking to the detailed representation of an artifact.
class	ControlTypeLink	Provide a URI linking to the control type if this artifact is a control sample.
class	DemuxArtifact	Details of an individual artifact that is part of a pooled artifact.
class	DemuxArtifactSample	The details of a sample that is part of a pooled artifact.
class	DemuxLink	Identifies the resource that will demultiplex this artifact.
class	DemuxSourceArtifact	Link to a source artifact for demultiplexing.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the detailed representation of the process that produced the Artifact.
class	PoolStep	The details of the pooling step that created the pooled sample(s).
class	SampleLink	Sample is a child element of Artifact and provides a URI linking to the detailed representation of a submitted Sample for the Artifact.
class	WorkflowStage	Provides links to workflow stages, stage names and their respective statuses.

Uses of LimsLinkBase in com.genologics.ri.artifactgroup

Subclasses of LimsLinkBase in com.genologics.ri.artifactgroup

Modifier and Type	Class	Description
class	ArtifactGroupLink	artifactGroup-link is a child element type of artifactGroup and provides a URI linking to the detailed representation of a artifactGroup.

Uses of LimsLinkBase in com.genologics.ri.automation

Subclasses of LimsLinkBase in com.genologics.ri.automation

Modifier and Type	Class	Description
class	AutomationLink	A link to an Automation entity.
class	ProcessTypeLink	Provides links to process types the automation is enabled on.

Uses of LimsLinkBase in com.genologics.ri.configuration

Subclasses of LimsLinkBase in com.genologics.ri.configuration

Modifier and Type	Class	Description
class	FieldLink	Field definition represents a user-defined field configured in the parent entity.
class	TypeDefinition	Type-definition provides a URI linking to the user defined type associated with the user-defined field, if applicable.
class	UdfConfigLink	Udfconfig-link is a child element type of udfs and provides a URI linking to the detailed representation of the configuration for a user defined field.
class	UdtConfigLink	Udtconfig-link is a child element type of udts and provides a URI linking to the detailed representation of the configuration for a user defined type.

Uses of LimsLinkBase in com.genologics.ri.container

Subclasses of LimsLinkBase in com.genologics.ri.container

Modifier and Type	Class	Description
class	ContainerLink	Container-link is a child element type of containers and provides a URI linking to the detailed representation of a container.
class	ContainerTypeLink	Container-type is a child element of container and provides a URI linking to the detailed representation of the container type that the container is associated with.
class	Placement	Placement is a child element of container and provides a URI linking to the detailed representation of the artifact that is located in a specific well of the container.

Uses of LimsLinkBase in com.genologics.ri.containertype

Subclasses of LimsLinkBase in com.genologics.ri.containertype

Modifier and Type	Class	Description
class	ContainerTypeLink	Container-type-link is a child element type of containers and provides a URI linking to the detailed representation of a container type.

Uses of LimsLinkBase in com.genologics.ri.controltype

Subclasses of LimsLinkBase in com.genologics.ri.controltype

Modifier and Type	Class	Description
class	ControlTypeLink	Control-type-link is a child element type of controlTypes and provides a URI linking to the detailed representation of a ControlType.

Uses of LimsLinkBase in com.genologics.ri.file

Subclasses of LimsLinkBase in com.genologics.ri.file

Modifier and Type	Class	Description
class	ClarityFile	The file element contains information about a file in the system.
class	FileLink	The file-link type provides a URI that links to information about a file in the system.

Uses of LimsLinkBase in com.genologics.ri.globaltoken

Subclasses of LimsLinkBase in com.genologics.ri.globaltoken

Modifier and Type	Class	Description
class	GlobalTokenLink	global-token-link is a child element type of global tokens and provides a URI linking to the detailed representation of a global token.

Uses of LimsLinkBase in com.genologics.ri.instrument

Subclasses of LimsLinkBase in com.genologics.ri.instrument

Modifier and Type	Class	Description
class	InstrumentLink	Instrument-link is a child element type of instruments and provides a URI linking to the detailed representation of an instrument.

Uses of LimsLinkBase in com.genologics.ri.instrumenttype

Subclasses of LimsLinkBase in com.genologics.ri.instrumenttype

Modifier and Type	Class	Description
class	InstrumentTypeLink	Instrument-type-link provides a URI linking to the detailed representation of an instrument type.

Uses of LimsLinkBase in com.genologics.ri.lab

Subclasses of LimsLinkBase in com.genologics.ri.lab

Modifier and Type	Class	Description
class	LabLink	Lab-link is a child element type of labs and provides a URI linking to the detailed representation of a lab.

Uses of LimsLinkBase in com.genologics.ri.permission

Subclasses of LimsLinkBase in com.genologics.ri.permission

Modifier and Type	Class	Description
class	PermissionLink	Permission-link provides a URI linking to the detailed representation of a permission.

Uses of LimsLinkBase in com.genologics.ri.process

Subclasses of LimsLinkBase in com.genologics.ri.process

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Process for the input-output-map.
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the Process that created the Artifact.
class	ProcessLink	Process-link is a child element type of process and provides a URI linking to the detailed representation of a process.
class	Technician	Technician is a child element of Process and provides a URI linking to the detailed representation of the technician that ran the Process.

Uses of LimsLinkBase in com.genologics.ri.processexecution

Subclasses of LimsLinkBase in com.genologics.ri.processexecution

Modifier and Type	Class	Description
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	Technician	The technician element provides a URI to the user that is responsible for the Process.

Uses of LimsLinkBase in com.genologics.ri.processtemplate

Subclasses of LimsLinkBase in com.genologics.ri.processtemplate

Modifier and Type	Class	Description
class	InstrumentLink	The instrument is a child element of process-template that provides a URI to the instrument that is responsible for running a Process created using this Process Template.
class	ProcessTemplateLink	process-template-link is a child element type of Process Templates and provides a URI linking to the detailed representation of a Process Template.
class	Technician	Technician is a child element of process-template and provides a URI linking to the detailed representation of the technician that is configured to run a Process created using this Process Template.

Uses of LimsLinkBase in com.genologics.ri.processtype

Subclasses of LimsLinkBase in com.genologics.ri.processtype

Modifier and Type	Class	Description
class	ContainerTypeLink	Link to a container type within a process type configuration.
class	ControlTypeLink	Link to a control type within a process type configuration.
class	ProcessTypeLink	Process-type-link is a child element type of process types and provides a URI linking to the detailed representation of a process type.
class	ReagentKitLink	Reagent-kit-link is a child element type of reagentKits and provides a URI linking to the detailed representation of a ReagentKit.
class	TypeDefinition	Type-definition is a child element of process type providing a URI linking to the configuration of a user-defined type for the process type.

Uses of LimsLinkBase in com.genologics.ri.project

Subclasses of LimsLinkBase in com.genologics.ri.project

Modifier and Type	Class	Description
class	ProjectLink	Project-link is a child element type of projects and provides a URI linking to the detailed representation of a project.
class	ResearcherLink	Researcher is a child element of Project and provides a URI linking to the detailed representation of the Researcher for the Project.

Uses of LimsLinkBase in com.genologics.ri.protocolconfiguration

Subclasses of LimsLinkBase in com.genologics.ri.protocolconfiguration

Modifier and Type	Class	Description
class	ProtocolLink	Link to a protocol configuration.

Uses of LimsLinkBase in com.genologics.ri.queue

Subclasses of LimsLinkBase in com.genologics.ri.queue

Modifier and Type	Class	Description
class	ArtifactLink	Artifact-Link provides a URI linking to the detailed representation of an artifact in a queue.

Uses of LimsLinkBase in com.genologics.ri.reagentkit

Subclasses of LimsLinkBase in com.genologics.ri.reagentkit

Modifier and Type	Class	Description
class	ReagentKitLink	Reagent-Kit-Link is a child element type of reagent kits and provides a URI linking to the detailed representation of a reagent kit.

Uses of LimsLinkBase in com.genologics.ri.reagentlot

Subclasses of LimsLinkBase in com.genologics.ri.reagentlot

Modifier and Type	Class	Description
class	ReagentKitLink	Reagent-Kit-Link is an element providing a URI linking to the detailed representation of a reagent kit.
class	ReagentLotLink	Reagent-lot-link is a child element type of Reagent Lots and provides a URI linking to the detailed representation of a Reagent Lot.
class	ResearcherLink	Researcher is a child element of the reagent lot.

Uses of LimsLinkBase in com.genologics.ri.reagenttype

Subclasses of LimsLinkBase in com.genologics.ri.reagenttype

Modifier and Type	Class	Description
class	ReagentTypeLink	Reagent-type-link is a child element type of reagent types and provides a URI linking to the detailed representation of a reagent type.

Uses of LimsLinkBase in com.genologics.ri.researcher

Subclasses of LimsLinkBase in com.genologics.ri.researcher

Modifier and Type	Class	Description
class	LabLink	Lab is a child element of researcher and provides a URI linking to the detailed representation of the lab for the researcher.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.
class	Role	The role element defines a researcher's level of access in the system.

Uses of LimsLinkBase in com.genologics.ri.role

Subclasses of LimsLinkBase in com.genologics.ri.role

Modifier and Type	Class	Description
class	PermissionLink	Permission-link is a child element type of permissions and provides a URI linking to the detailed representation of a Permission.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.
class	RoleLink	Role-link is a child element type of roles and provides a URI linking to the detailed representation of a Role.

Uses of LimsLinkBase in com.genologics.ri.routing

Subclasses of LimsLinkBase in com.genologics.ri.routing

Modifier and Type	Class	Description
class	ArtifactLink	Link to an artifact for routing purposes.

Uses of LimsLinkBase in com.genologics.ri.sample

Subclasses of LimsLinkBase in com.genologics.ri.sample

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of Sample and provides a URI linking to the detailed representation of the artifact for the Sample.
class	ControlTypeLink	Control Type provides a name and a URI linking to the detailed representation of the Control Type associated with the Sample.
class	ProjectLink	Project is a child element of Sample and provides a URI linking to the detailed representation of the Project for the Sample.
class	SampleLink	Sample-link is a child element type of samples and provides a URI linking to the detailed representation of a sample.
class	Submitter	Submitter is a child element of Sample and provides a URI linking to the detailed representation of the submitter for the Sample.

Uses of LimsLinkBase in com.genologics.ri.savedquery

Subclasses of LimsLinkBase in com.genologics.ri.savedquery

Modifier and Type	Class	Description
class	SavedQueryLink	Link to a saved query entity.

Uses of LimsLinkBase in com.genologics.ri.stage

Subclasses of LimsLinkBase in com.genologics.ri.stage

Modifier and Type	Class	Description
class	ProtocolLink	Protocol link for a stage in a workflow.
class	ProtocolStepLink	Protocol step link for a stage in a workflow.
class	WorkflowLink	Workflow link for a stage.

Uses of LimsLinkBase in com.genologics.ri.step

Subclasses of LimsLinkBase in com.genologics.ri.step

Modifier and Type	Class	Description
class	ActionsLink	Identifies the resource that represents the actions applied or to be applied by the step.
class	ArrangementsLink	Identifies the resource that represents the arrangements (if any) for the step.
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Step for the input-output-map.
class	AutomaticNextStepLink	Identifies the resource that represents the step that was automatically begun when the "Automatically start Next Step" option is enabled in a step's configuration.
class	ContainerLink	Provides a URI linking to a selected container to be used for placement.
class	CreationInput	Typically, provides a URI linking to the input artifact.
class	EscalatedArtifact	Sample next action or step.
class	Input	Provides input URI links.
class	NextAction	Sample next action or step.
class	Output	Provides a URI linking to the output artifact and reagent label.
class	OutputArrangement	Provides a URI linking to the output container and Tube Rack arrangement.
class	OutputPlacement	Provides a URI linking to the output artifact and container placement.
class	PlacementsLink	Identifies the resource that represents the output placements for the step.
class	PoolsLink	Identifies the resource that represents the pools added by the step.
class	ProgramStatusLink	Identifies the resource that represents the program status for the step.
class	ReagentLotLink	Provides a URI linking to the reagent lot details.
class	ReagentLotsLink	Identifies the resource that represents the reagent lots for the step.
class	ReagentsLink	Identifies the resource that represents the reagents added by the step.
class	SharedResultFile	The file element describes a shared result file output that will be displayed in the step-setup view.
class	StepDetailsLink	Identifies the resource that represents the details for the step.
class	StepSetupLink	Identifies the resource that represents the setup for the step.
class	Technician	Technician is a child element of Step and provides a URI linking to the detailed representation of the technician that ran the Step.
class	UserLink	Describes a user as required in the context of step escalations.

Uses of LimsLinkBase in com.genologics.ri.stepconfiguration

Subclasses of LimsLinkBase in com.genologics.ri.stepconfiguration

Modifier and Type	Class	Description
class	NextStep	List of step transitions including the URI allowing access to the specific next step

Uses of LimsLinkBase in com.genologics.ri.workflowconfiguration

Subclasses of LimsLinkBase in com.genologics.ri.workflowconfiguration

Modifier and Type	Class	Description
class	ProtocolLink	Protocol-link is a child element type of workflow and provides a URI linking to the detailed representation of a protocol.
class	StageLink	The detailed representation of a Stage (the portion of a workflow to which samples can be associated in order to be queued)
class	WorkflowLink	Workflow-link is a child element type of workflows and provides a URI linking to the detailed representation of a workflow.