Uses of Interface
com.genologics.ri.Locatable

Packages that use Locatable

Package	Description
com.genologics.ri	The root package of the classes generated (originally) from the Clarity schemas.
com.genologics.ri.artifact
com.genologics.ri.artifactgroup
com.genologics.ri.automation
com.genologics.ri.configuration
com.genologics.ri.container
com.genologics.ri.containertype
com.genologics.ri.controltype
com.genologics.ri.file
com.genologics.ri.instrument
com.genologics.ri.instrumenttype
com.genologics.ri.lab
com.genologics.ri.permission
com.genologics.ri.process
com.genologics.ri.processexecution
com.genologics.ri.processtemplate
com.genologics.ri.processtype
com.genologics.ri.project
com.genologics.ri.protocolconfiguration
com.genologics.ri.queue
com.genologics.ri.reagentkit
com.genologics.ri.reagentlot
com.genologics.ri.reagenttype
com.genologics.ri.researcher
com.genologics.ri.role
com.genologics.ri.routing
com.genologics.ri.sample
com.genologics.ri.stage
com.genologics.ri.step
com.genologics.ri.stepconfiguration
com.genologics.ri.version
com.genologics.ri.workflowconfiguration
org.cruk.clarity.api	The main public package of the Clarity API.
org.cruk.clarity.api.cache	Package supporting caching of Clarity entities in memory (or, if so configured, on disk) to reduce the amount of traffic being sent to and from the REST API.
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.
org.cruk.clarity.api.playback	The classes necessary to replay server calls from entity XML files on disk.
org.cruk.clarity.api.record	The classes necessary to record entities returned from a Clarity server to XML files on disk.
org.cruk.clarity.api.search	Classes supporting the recording of searches for record and playback.

Uses of Locatable in com.genologics.ri

Classes in com.genologics.ri with type parameters of type Locatable

Modifier and Type	Interface	Description
interface	LimsLink<E extends Locatable>	Interface for classes that are links to real LIMS objects.
interface	Linkable<E extends Locatable>	Marker interface that indicates a locatable object can be linked to.

Subinterfaces of Locatable in com.genologics.ri

Modifier and Type	Interface	Description
interface	LimsEntity<E extends LimsEntity<E>>	Interface for all objects that are real LIMS entities (i.e. not links or other references).
interface	LimsEntityLink<E extends LimsEntity<E>>	Interface for links to LimsEntity objects.
interface	LimsEntityLinkable<E extends LimsEntity<E>>	Interface for entities and links to entities that are identifiable in the system (i.e. have a LIMS id).
interface	LimsLink<E extends Locatable>	Interface for classes that are links to real LIMS objects.
interface	Linkable<E extends Locatable>	Marker interface that indicates a locatable object can be linked to.

Classes in com.genologics.ri that implement Locatable

Modifier and Type	Class	Description
class	ContainerLink	Container is a child element of location and provides a URI linking to the detailed representation of the Container for the location.
class	ExternalId	An external id is a reference to an identifier in an external system that contains additional information about a representation within the API.
class	Link	A link provides a URI linking to an additional resource.
class	Location	Location provides a URI linking to the detailed representation of a Container along with the well location within that Container.
class	Page	The link to a page of additional content.

Methods in com.genologics.ri with parameters of type Locatable

Modifier and Type	Method	Description
static String	Link.limsIdFromUri(Locatable thing)	Extract the LIMS identifier from the URI of a Locatable object.

Uses of Locatable in com.genologics.ri.artifact

Classes in com.genologics.ri.artifact that implement Locatable

Modifier and Type	Class	Description
class	Artifact	The detailed representation of an Artifact.
class	ArtifactGroupLink	Artifact group is a child element of Artifact and provides a URI linking to the detailed representation of the artifact group that the Artifact belongs to.
class	ArtifactLink	Artifact-link is a child element type of artifacts and provides a URI linking to the detailed representation of an artifact.
class	ControlTypeLink	Provide a URI linking to the control type if this artifact is a control sample.
class	Demux	The detailed representation of the demultiplexing of a pooled artifact.
class	DemuxArtifact	Details of an individual artifact that is part of a pooled artifact.
class	DemuxArtifactSample	The details of a sample that is part of a pooled artifact.
class	DemuxLink	Identifies the resource that will demultiplex this artifact.
class	DemuxSourceArtifact
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the detailed representation of the process that produced the Artifact.
class	PoolStep	The details of the pooling step that created the pooled sample(s).
class	SampleLink	Sample is a child element of Artifact and provides a URI linking to the detailed representation of a submitted Sample for the Artifact.
class	WorkflowStage	Provides links to workflow stages, stage names and their respective statuses.

Uses of Locatable in com.genologics.ri.artifactgroup

Classes in com.genologics.ri.artifactgroup that implement Locatable

Modifier and Type	Class	Description
class	ArtifactGroup	ArtifactGroups are created by the Lab Scientist interface for each workflow.
class	ArtifactGroupLink	artifactGroup-link is a child element type of artifactGroup and provides a URI linking to the detailed representation of a artifactGroup.
class	Artifacts	Artifacts is a link to 1...n child artifacts, that belong to the artifactGroup The link to an artifactList, filtered on artifactgroupID

Uses of Locatable in com.genologics.ri.automation

Classes in com.genologics.ri.automation that implement Locatable

Modifier and Type	Class	Description
class	Automation	The automation element integrates the process with the Automation Worker (previously called External Program Plugin or EPP).
class	AutomationLink
class	ProcessTypeLink	Provides links to process types the automation is enabled on.

Uses of Locatable in com.genologics.ri.configuration

Classes in com.genologics.ri.configuration that implement Locatable

Modifier and Type	Class	Description
class	Field	The detailed representation of the configuration of a user-defined field.
class	FieldLink	Field definition represents a user-defined field configured in the parent entity.
class	Type	The detailed representation of the configuration of a user defined type.
class	TypeDefinition	Type-definition provides a URI linking to the user defined type associated with the user-defined field, if applicable.
class	UdfConfigLink	Udfconfig-link is a child element type of udfs and provides a URI linking to the detailed representation of the configuration for a user defined field.
class	UdtConfigLink	Udtconfig-link is a child element type of udts and provides a URI linking to the detailed representation of the configuration for a user defined type.

Uses of Locatable in com.genologics.ri.container

Classes in com.genologics.ri.container that implement Locatable

Modifier and Type	Class	Description
class	Container
class	ContainerLink	Container-link is a child element type of containers and provides a URI linking to the detailed representation of a container.
class	ContainerTypeLink	Container-type is a child element of container and provides a URI linking to the detailed representation of the container type that the container is associated with.
class	Placement	Placement is a child element of container and provides a URI linking to the detailed representation of the artifact that is located in a specific well of the container.

Uses of Locatable in com.genologics.ri.containertype

Classes in com.genologics.ri.containertype that implement Locatable

Modifier and Type	Class	Description
class	ContainerType	The detailed representation of a container type.
class	ContainerTypeLink	Container-type-link is a child element type of containers and provides a URI linking to the detailed representation of a container type.

Uses of Locatable in com.genologics.ri.controltype

Classes in com.genologics.ri.controltype that implement Locatable

Modifier and Type	Class	Description
class	ControlType
class	ControlTypeLink	Control-type-link is a child element type of controlTypes and provides a URI linking to the detailed representation of a ControlType.

Uses of Locatable in com.genologics.ri.file

Classes in com.genologics.ri.file that implement Locatable

Modifier and Type	Class	Description
class	ClarityFile	The file element contains information about a file in the system.
class	FileLink	The file-link type provides a URI that links to information about a file in the system.

Uses of Locatable in com.genologics.ri.instrument

Classes in com.genologics.ri.instrument that implement Locatable

Modifier and Type	Class	Description
class	Instrument	The detailed representation of an instrument.
class	InstrumentLink	Instrument-link is a child element type of instruments and provides a URI linking to the detailed representation of an instrument.

Uses of Locatable in com.genologics.ri.instrumenttype

Classes in com.genologics.ri.instrumenttype that implement Locatable

Modifier and Type	Class	Description
class	InstrumentType	An instrument describes properties common to all instruments of that type.
class	InstrumentTypeLink
class	InstrumentTypeProcessType

Uses of Locatable in com.genologics.ri.lab

Classes in com.genologics.ri.lab that implement Locatable

Modifier and Type	Class	Description
class	Lab	The detailed representation of a lab.
class	LabLink	Lab-link is a child element type of labs and provides a URI linking to the detailed representation of a lab.

Uses of Locatable in com.genologics.ri.permission

Classes in com.genologics.ri.permission that implement Locatable

Modifier and Type	Class	Description
class	Permission
class	PermissionLink

Uses of Locatable in com.genologics.ri.process

Classes in com.genologics.ri.process that implement Locatable

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Process for the input-output-map.
class	ClarityProcess	The detailed representation of a process.
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	ParentProcessLink	Parent-process is a child element of Artifact and provides a URI linking to the Process that created the Artifact.
class	ProcessLink	Process-link is a child element type of process and provides a URI linking to the detailed representation of a process.
class	ProcessTypeLink	Process-type is a child element of process that identifies and provides a URI linking to the detailed representation of the process type that the process is associated with.
class	Technician	Technician is a child element of Process and provides a URI linking to the detailed representation of the technician that ran the Process.

Uses of Locatable in com.genologics.ri.processexecution

Classes in com.genologics.ri.processexecution that implement Locatable

Modifier and Type	Class	Description
class	Input	The input element provides URIs to one or more Artifacts that will be used by the Process.
class	InstrumentLink	The instrument element provides a URI to the instrument that is responsible for running the process.
class	Technician	The technician element provides a URI to the user that is responsible for the Process.

Uses of Locatable in com.genologics.ri.processtemplate

Classes in com.genologics.ri.processtemplate that implement Locatable

Modifier and Type	Class	Description
class	InstrumentLink	The instrument is a child element of process-template that provides a URI to the instrument that is responsible for running a Process created using this Process Template.
class	ProcessTemplate	The detailed representation of a Process Template.
class	ProcessTemplateLink	process-template-link is a child element type of Process Templates and provides a URI linking to the detailed representation of a Process Template.
class	ProcessTypeLink	Process-type is a child element of process-template that identifies and provides a URI linking to the detailed representation of the Process Type that the Process Template is associated with.
class	Technician	Technician is a child element of process-template and provides a URI linking to the detailed representation of the technician that is configured to run a Process created using this Process Template.

Uses of Locatable in com.genologics.ri.processtype

Classes in com.genologics.ri.processtype that implement Locatable

Modifier and Type	Class	Description
class	ContainerTypeLink
class	ControlTypeLink
class	ProcessType	The process-type element contains the XML representation of a type of process configured in the system.
class	ProcessTypeLink	Process-type-link is a child element type of process types and provides a URI linking to the detailed representation of a process type.
class	ReagentKitLink	Reagent-kit-link is a child element type of reagentKits and provides a URI linking to the detailed representation of a ReagentKit.
class	TypeDefinition	Type-definition is a child element of process type providing a URI linking to the configuration of a user-defined type for the process type.

Uses of Locatable in com.genologics.ri.project

Classes in com.genologics.ri.project that implement Locatable

Modifier and Type	Class	Description
class	Project	The detailed representation of a Project.
class	ProjectLink	Project-link is a child element type of projects and provides a URI linking to the detailed representation of a project.
class	ResearcherLink	Researcher is a child element of Project and provides a URI linking to the detailed representation of the Researcher for the Project.

Uses of Locatable in com.genologics.ri.protocolconfiguration

Classes in com.genologics.ri.protocolconfiguration that implement Locatable

Modifier and Type	Class	Description
class	Protocol	Detailed representation of a protocol.
class	ProtocolLink

Uses of Locatable in com.genologics.ri.queue

Classes in com.genologics.ri.queue that implement Locatable

Modifier and Type	Class	Description
class	ArtifactLink

Uses of Locatable in com.genologics.ri.reagentkit

Classes in com.genologics.ri.reagentkit that implement Locatable

Modifier and Type	Class	Description
class	ReagentKit	The detailed representation of a reagent kit.
class	ReagentKitLink	Reagent-Kit-Link is a child element type of reagent kits and provides a URI linking to the detailed representation of a reagent kit.

Uses of Locatable in com.genologics.ri.reagentlot

Classes in com.genologics.ri.reagentlot that implement Locatable

Modifier and Type	Class	Description
class	ReagentKitLink	Reagent-Kit-Link is an element providing a URI linking to the detailed representation of a reagent kit.
class	ReagentLot	The detailed representation of a Reagent Lot
class	ReagentLotLink	Reagent-lot-link is a child element type of Reagent Lots and provides a URI linking to the detailed representation of a Reagent Lot.
class	ResearcherLink	Researcher is a child element of the reagent lot.

Uses of Locatable in com.genologics.ri.reagenttype

Classes in com.genologics.ri.reagenttype that implement Locatable

Modifier and Type	Class	Description
class	ReagentType	The detailed representation of a reagent type.
class	ReagentTypeLink	Reagent-type-link is a child element type of reagent types and provides a URI linking to the detailed representation of a reagent type.

Uses of Locatable in com.genologics.ri.researcher

Classes in com.genologics.ri.researcher that implement Locatable

Modifier and Type	Class	Description
class	LabLink	Lab is a child element of researcher and provides a URI linking to the detailed representation of the lab for the researcher.
class	Researcher	The detailed representation of a researcher.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.
class	Role	The role element defines a researcher's level of access in the system.

Uses of Locatable in com.genologics.ri.role

Classes in com.genologics.ri.role that implement Locatable

Modifier and Type	Class	Description
class	PermissionLink	Permission-link is a child element type of permissions and provides a URI linking to the detailed representation of a Permission.
class	ResearcherLink	Researcher-link is a child element type of researchers and provides a URI linking to the detailed representation of a researcher.
class	Role	The detailed representation of a Role
class	RoleLink	Role-link is a child element type of roles and provides a URI linking to the detailed representation of a Role.

Uses of Locatable in com.genologics.ri.routing

Classes in com.genologics.ri.routing that implement Locatable

Modifier and Type	Class	Description
class	ArtifactLink

Uses of Locatable in com.genologics.ri.sample

Classes in com.genologics.ri.sample that implement Locatable

Modifier and Type	Class	Description
class	ArtifactLink	Artifact is a child element of Sample and provides a URI linking to the detailed representation of the artifact for the Sample.
class	ControlTypeLink	Control Type provides a name and a URI linking to the detailed representation of the Control Type associated with the Sample.
class	ProjectLink	Project is a child element of Sample and provides a URI linking to the detailed representation of the Project for the Sample.
class	Sample	The detailed representation of a sample.
class	SampleLink	Sample-link is a child element type of samples and provides a URI linking to the detailed representation of a sample.
class	Submitter	Submitter is a child element of Sample and provides a URI linking to the detailed representation of the submitter for the Sample.

Uses of Locatable in com.genologics.ri.stage

Classes in com.genologics.ri.stage that implement Locatable

Modifier and Type	Class	Description
class	ProtocolLink	Protocol link for the stage.
class	ProtocolStepLink	Protocol Step link for the stage.
class	Stage	The detailed representation of a stage.
class	WorkflowLink	Workflow link for the stage.

Uses of Locatable in com.genologics.ri.step

Classes in com.genologics.ri.step that implement Locatable

Modifier and Type	Class	Description
class	Actions
class	ActionsLink	Identifies the resource that represents the actions applied or to be applied by the step.
class	ArtifactLink	Artifact is a child element of input-output-map and provides a link to an Artifact that was either an input or output of the Step for the input-output-map.
class	AutomaticNextStepLink	Identifies the resource that represents the step that was automatically begun when the "Automatically start Next Step" option is enabled in a step's configuration.
class	ContainerLink	Provides a URI linking to a selected container to be used for placement.
class	CreationInput	Typically, provides a URI linking to the input artifact.
class	EscalatedArtifact	Sample next action or step.
class	Input	Provides input URI links.
class	InstrumentLink	The instrument element provides a URI to the selected instrument for the step.
class	NextAction	Sample next action or step.
class	Output	Provides a URI linking to the output artifact and reagent label.
class	OutputPlacement	Provides a URI linking to the output artifact and container placement.
class	Placements	The detailed representation of a step's output artifact container placements
class	PlacementsLink	Identifies the resource that represents the output placements for the step.
class	Pools	The detailed representation of a step's pooled inputs.
class	PoolsLink	Identifies the resource that represents the pools added by the step.
class	ProcessStep	The detailed representation of a step.
class	ProgramStatus	The current EPP status for a step (supports automatically triggered programs only).
class	ProgramStatusLink	Identifies the resource that represents the program status for the step.
class	ReagentLotLink	Provides a URI linking to the reagent lot details.
class	ReagentLots	The list representation of a step's reagent lots.
class	ReagentLotsLink	Identifies the resource that represents the reagent lots for the step.
class	Reagents	The detailed representation of a step's output artifact reagents.
class	ReagentsLink	Identifies the resource that represents the reagents added by the step.
class	SharedResultFile	The file element describes a shared result file output that will be displayed in the step-setup view.
class	StepConfiguration	Identifies the configuration information for the step run.
class	StepDetails
class	StepDetailsLink	Identifies the resource that represents the details for the step.
class	StepSetup
class	StepSetupLink	Identifies the resource that represents the setup for the step.
class	UserLink	Describes a user as required in the context of step escalations.

Uses of Locatable in com.genologics.ri.stepconfiguration

Classes in com.genologics.ri.stepconfiguration that implement Locatable

Modifier and Type	Class	Description
class	ControlTypeLink	Control-type-link is a child element type of controlTypes and provides a URI linking to the detailed representation of a ControlType.
class	NextStep	List of step transitions including the URI allowing access to the specific next step
class	ProcessTypeLink	Process-type is a child element that provides a URI linking to the detailed representation of the process type that the step is associated with.
class	ProtocolStep	Detailed representation of a Step
class	ReagentKitLink	Reagent-Kit-Link is an element providing a URI linking to the detailed representation of a reagent kit.

Uses of Locatable in com.genologics.ri.version

Classes in com.genologics.ri.version that implement Locatable

Modifier and Type	Class	Description
class	Version

Uses of Locatable in com.genologics.ri.workflowconfiguration

Classes in com.genologics.ri.workflowconfiguration that implement Locatable

Modifier and Type	Class	Description
class	ProtocolLink	Protocol-link is a child element type of workflow and provides a URI linking to the detailed representation of a protocol.
class	StageLink	The detailed representation of a Stage (the portion of a workflow to which samples can be associated in order to be queued)
class	Workflow	The detailed representation of a Workflow.
class	WorkflowLink	Workflow-link is a child element type of workflows and provides a URI linking to the detailed representation of a workflow.

Uses of Locatable in org.cruk.clarity.api

Methods in org.cruk.clarity.api with type parameters of type Locatable

Modifier and Type	Method	Description
<E extends Locatable> void	ClarityAPI.create(E entity)	Create an instance of the given entity on the server.
<E extends Locatable> void	ClarityAPI.createAll(Collection<E> entities)	Create a batch of entities on the server.
<E extends Locatable> void	ClarityAPI.delete(E entity)	Deletes an entity from the server.
<E extends Locatable> void	ClarityAPI.deleteAll(Collection<E> entities)	Deletes a batch of entities from the server.
<E extends Locatable> List<LimsLink<E>>	ClarityAPI.find(Map<String,?> searchTerms, Class<E> entityClass)	Search for entities of the given type based on name value pairs.
<E extends Locatable> URI	ClarityAPI.limsIdToUri(String limsid, Class<E> entityClass)	Convert the given LIMS id to a full URI for that entity.
<E extends Locatable> URI	ClarityAPI.limsIdToUri(String outerLimsid, String innerLimsid, Class<E> entityClass)	Convert the given LIMS ids to a full URI for that entity.
<E extends Locatable> List<LimsLink<E>>	ClarityAPI.listAll(Class<E> entityClass)	List all the objects of the given entity class.
<E extends Locatable> List<LimsLink<E>>	ClarityAPI.listSome(Class<E> entityClass, int startIndex, int number)	List an arbitrary number of objects of the given entity class.
<E extends Locatable> E	ClarityAPI.load(LimsLink<E> link)	Load an entity using a link to that entity.
<E extends Locatable> E	ClarityAPI.load(String limsid, Class<E> entityClass)	Load an entity by its LIMS id.
<E extends Locatable> E	ClarityAPI.load(String outerLimsid, String innerLimsid, Class<E> entityClass)	Load an entity by its two required LIMS ids.
<E extends Locatable> List<E>	ClarityAPI.loadAll(Collection<? extends LimsLink<E>> links)	Fetch a collection of LIMS entities given in the collection.
<E extends Locatable> E	ClarityAPI.retrieve(String uri, Class<E> entityClass)	Retrieve an entity using a String form of its URI.
<E extends Locatable> E	ClarityAPI.retrieve(URI uri, Class<E> entityClass)	Retrieve an entity by its URI.
<E extends Locatable> void	ClarityAPI.update(E entity)	Update the given entity on the server.
<E extends Locatable> void	ClarityAPI.updateAll(Collection<E> entities)	Updates a batch of entities.

Uses of Locatable in org.cruk.clarity.api.cache

Methods in org.cruk.clarity.api.cache with type parameters of type Locatable

Modifier and Type	Method	Description
protected <E extends Locatable> E	ClarityAPICache.getFromWrapper(org.cruk.clarity.api.cache.internal.CacheElementWrapper wrapper)	Get the object from its cache wrapper.
<E extends Locatable> List<E>	ClarityAPICache.loadAll(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point for the ClarityAPI.loadAll method.

Methods in org.cruk.clarity.api.cache that return Locatable

Modifier and Type	Method	Description
Locatable	ClarityAPICache.runSomething(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point for the methods that take an object in to perform an operation and return an object as a result (not necessarily object passed in).

Methods in org.cruk.clarity.api.cache with parameters of type Locatable

Modifier and Type	Method	Description
String	ClarityAPICache.keyFromLocatable(Locatable thing)	Extract the cache key value from the given object's URI.
long	ClarityAPICache.versionFromLocatable(Locatable thing)	Extract the state value from the given object's URI, if such an entity can have a state value.

Uses of Locatable in org.cruk.clarity.api.impl

Fields in org.cruk.clarity.api.impl with type parameters of type Locatable

Modifier and Type	Field	Description
protected Map<Class<? extends Locatable>,Class<?>>	ClarityAPIImpl.entityToBatchRetrieveClassMap	Map of Locatable class to the class that provides the mass fetch or update operation.
protected Map<Class<? extends Locatable>,Class<?>>	ClarityAPIImpl.entityToListClassMap	Map of Locatable class to the class that provides the list of links returned from listing or searching for objects of that type.

Methods in org.cruk.clarity.api.impl with type parameters of type Locatable

Modifier and Type	Method	Description
protected <E extends Locatable> Class<E>	ClarityAPIImpl.checkCollectionHomogeneousAndUnique(Collection<E> entities, boolean requireUri)	Check that the given collection contains no nulls, that each item either has a URI or does not have a URI (depending on requireUri, that all objects in the collection are of the same class, and that, if requireUri is true, there are no repeated URIs in the collection (ignoring state).
protected <E extends Locatable, L extends LimsLink<E>> Class<E>	ClarityAPIImpl.checkLinkCollectionHomogeneousAndUnique(Collection<L> links)	Check that the given collection of links contains no nulls, that each link has a URI, that all links in the collection are links to the same entity class, and that there are no repeated URIs in the collection (ignoring state).
<E extends Locatable> void	ClarityAPIImpl.create(E entity)	Create an instance of the given entity on the server.
<E extends Locatable> void	ClarityAPIImpl.createAll(Collection<E> entities)	Create a batch of entities on the server.
<E extends Locatable> void	ClarityAPIImpl.delete(E entity)	Deletes an entity from the server.
<E extends Locatable> void	ClarityAPIImpl.deleteAll(Collection<E> entities)	Deletes a batch of entities from the server.
<E extends Locatable> List<LimsLink<E>>	ClarityAPIImpl.find(Map<String,?> searchTerms, Class<E> entityClass)	Search for entities of the given type based on name value pairs.
protected <E extends Locatable, BH extends Batch<E>> Class<BH>	ClarityAPIImpl.getBatchRetrieveClassForEntity(Class<E> entityClass)	Get the class that allow mass retrieve or update operations for the given entity class.
<E extends Locatable, BH extends Batch<? extends LimsLink<E>>> Class<BH>	ClarityAPIImpl.getQueryResultsClassForEntity(Class<E> entityClass)	Get the class that holds a list of links for the given entity when returned from a list or search operation.
<E extends Locatable, BH extends Batch<? extends LimsLink<E>>> Class<BH>	ClarityAPIInternal.getQueryResultsClassForEntity(Class<E> entityClass)	Get the class that holds a list of links for the given entity when returned from a list or search operation.
<E extends Locatable> URI	ClarityAPIImpl.limsIdToUri(String limsid, Class<E> entityClass)	Convert the given LIMS id to a full URI for that entity.
<E extends Locatable> URI	ClarityAPIImpl.limsIdToUri(String outerLimsid, String innerLimsid, Class<E> entityClass)	Convert the given LIMS ids to a full URI for that entity.
<E extends Locatable> List<LimsLink<E>>	ClarityAPIImpl.listAll(Class<E> entityClass)	List all the objects of the given entity class.
<E extends Locatable> List<LimsLink<E>>	ClarityAPIImpl.listSome(Class<E> entityClass, int startIndex, int number)	List an arbitrary number of objects of the given entity class.
<E extends Locatable> E	ClarityAPIImpl.load(LimsLink<E> link)	Load an entity using a link to that entity.
<E extends Locatable> E	ClarityAPIImpl.load(String limsid, Class<E> entityClass)	Load an entity by its LIMS id.
<E extends Locatable> E	ClarityAPIImpl.load(String outerLimsid, String innerLimsid, Class<E> entityClass)	Load an entity by its two required LIMS ids.
<E extends Locatable> List<E>	ClarityAPIImpl.loadAll(Collection<? extends LimsLink<E>> links)	Fetch a collection of LIMS entities given in the collection.
protected <E extends Locatable> String	ClarityAPIImpl.makeUri(String limsid, Class<E> entityClass, String method)	Convert the given LIMS id to a full URI for that entity without creating a URI object.
protected <E extends Locatable> String	ClarityAPIImpl.makeUri(String outerLimsid, String innerLimsid, Class<E> entityClass, String method)	Convert the given LIMS ids to a full URI for that entity without creating a URI object.
protected <E extends Locatable> void	ClarityAPIImpl.reflectiveCollectionUpdate(Collection<E> originals, List<E> retrieved)	Update a collection of original entities with the fields from an equivalent list of freshly retrieved versions of the same entities.
protected <E extends Locatable> void	ClarityAPIImpl.reorderBatchFetchList(Collection<? extends Locatable> requestLinks, List<E> entities)	Reorder a collection of entities into the same order given by their request objects.
<E extends Locatable> E	ClarityAPIImpl.retrieve(String uri, Class<E> entityClass)	Retrieve an entity using a String form of its URI.
<E extends Locatable> E	ClarityAPIImpl.retrieve(URI uri, Class<E> entityClass)	Retrieve an entity by its URI.
<E extends Locatable> void	ClarityAPIImpl.update(E entity)	Update the given entity on the server.
<E extends Locatable> void	ClarityAPIImpl.updateAll(Collection<E> entities)	Updates a batch of entities.

Methods in org.cruk.clarity.api.impl with parameters of type Locatable

Modifier and Type	Method	Description
protected String	ClarityAPIImpl.idFromUri(Locatable thing)	Get an identifier for a locatable object from its URI.

Method parameters in org.cruk.clarity.api.impl with type arguments of type Locatable

Modifier and Type	Method	Description
protected <E extends Locatable> void	ClarityAPIImpl.reorderBatchFetchList(Collection<? extends Locatable> requestLinks, List<E> entities)	Reorder a collection of entities into the same order given by their request objects.

Uses of Locatable in org.cruk.clarity.api.playback

Methods in org.cruk.clarity.api.playback with type parameters of type Locatable

Modifier and Type	Method	Description
<E extends Locatable> List<LimsLink<E>>	ClarityAPIPlaybackAspect.doFind(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the Clarity client's find() method.
<E extends Locatable, L extends LimsLink<E>, BH extends Batch<L>> List<L>	ClarityAPIPlaybackAspect.doList(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the listAll and listSome methods load the list of links from a serialised Batch object in XML file in the messages directory.

Uses of Locatable in org.cruk.clarity.api.record

Methods in org.cruk.clarity.api.record with type parameters of type Locatable

Modifier and Type	Method	Description
<E extends Locatable> List<LimsLink<E>>	ClarityAPIRecordingAspect.doFind(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the Clarity client's find() method.
<E extends Locatable, L extends LimsLink<E>, BH extends Batch<L>> List<L>	ClarityAPIRecordingAspect.doList(org.aspectj.lang.ProceedingJoinPoint pjp)	Join point around the listAll and listSome methods that recreate the Batch object that holds the list of links to the real things and writes that list to an XML file in the messages directory.

Uses of Locatable in org.cruk.clarity.api.search

Classes in org.cruk.clarity.api.search with type parameters of type Locatable

Modifier and Type	Class	Description
class	Search<E extends Locatable>	A class holding both the parameters of a search and the links returned from that search.
class	SearchTerms<E extends Locatable>	Class recording the parameters and entity class of a call to the API's find method.