Uses of Class
com.genologics.ri.protocolconfiguration.Protocol

Packages that use Protocol

Package	Description
com.genologics.ri.protocolconfiguration	Provides JAXB bindings for the protocol configuration domain model.
com.genologics.ri.stage	Entities for workflow stages in the Clarity system.
com.genologics.ri.workflowconfiguration	Entities for workflow configuration in the Clarity system.
org.cruk.clarity.api.automation	Tools to help move steps through Clarity using the API that allows processes to be run as if they are done through the browser, rather than the ExecutableProcess mechanism.
org.cruk.clarity.api.automation.impl	Implementation of the automation service.

Uses of Protocol in com.genologics.ri.protocolconfiguration

Methods in com.genologics.ri.protocolconfiguration that return Protocol

Modifier and Type	Method	Description
Protocol	ObjectFactory.createProtocol()	Creates a new Protocol instance.

Methods in com.genologics.ri.protocolconfiguration that return types with arguments of type Protocol

Modifier and Type	Method	Description
JAXBElement<Protocol>	ObjectFactory.createProtocol(Protocol value)	Creates a JAXBElement for a Protocol.
Class<Protocol>	ProtocolLink.getEntityClass()	Gets the entity class this link refers to.
LimsLink<Protocol>	Protocol.getLink()	Get a concrete link object to this Linkable thing.

Methods in com.genologics.ri.protocolconfiguration with parameters of type Protocol

Modifier and Type	Method	Description
JAXBElement<Protocol>	ObjectFactory.createProtocol(Protocol value)	Creates a JAXBElement for a Protocol.

Constructors in com.genologics.ri.protocolconfiguration with parameters of type Protocol

Modifier	Constructor	Description
	ProtocolLink(Protocol protocol)	Constructor from a protocol.

Constructor parameters in com.genologics.ri.protocolconfiguration with type arguments of type Protocol

Modifier	Constructor	Description
	ProtocolLink(Linkable<Protocol> link)	Constructor from a linkable object.

Uses of Protocol in com.genologics.ri.stage

Methods in com.genologics.ri.stage that return types with arguments of type Protocol

Modifier and Type	Method	Description
Class<Protocol>	ProtocolLink.getEntityClass()	Gets the entity class for this link.

Method parameters in com.genologics.ri.stage with type arguments of type Protocol

Modifier and Type	Method	Description
void	Stage.setProtocol(Linkable<Protocol> protocol)	Sets the protocol for this stage.

Constructor parameters in com.genologics.ri.stage with type arguments of type Protocol

Modifier	Constructor	Description
	ProtocolLink(Linkable<Protocol> link)	Constructor from a linkable protocol object.

Uses of Protocol in com.genologics.ri.workflowconfiguration

Methods in com.genologics.ri.workflowconfiguration that return types with arguments of type Protocol

Modifier and Type	Method	Description
Class<Protocol>	ProtocolLink.getEntityClass()	Gets the entity class for this link.

Method parameters in com.genologics.ri.workflowconfiguration with type arguments of type Protocol

Modifier and Type	Method	Description
ProtocolLink	Workflow.addProtocol(Linkable<Protocol> protocol)	Adds a protocol to this workflow.

Constructors in com.genologics.ri.workflowconfiguration with parameters of type Protocol

Modifier	Constructor	Description
	ProtocolLink(Protocol protocol)	Constructor accepting a Protocol object.

Constructor parameters in com.genologics.ri.workflowconfiguration with type arguments of type Protocol

Modifier	Constructor	Description
	ProtocolLink(Linkable<Protocol> link)	Constructor accepting a Linkable object.

Uses of Protocol in org.cruk.clarity.api.automation

Methods in org.cruk.clarity.api.automation that return Protocol

Modifier and Type	Method	Description
Protocol	ClarityProcessAutomation.findProtocol(String name)	Find a protocol by name.

Methods in org.cruk.clarity.api.automation with parameters of type Protocol

Modifier and Type	Method	Description
ProtocolStep	ClarityProcessAutomation.findStep(Protocol protocol, String name)	Find a step in a protocol by name.

Uses of Protocol in org.cruk.clarity.api.automation.impl

Methods in org.cruk.clarity.api.automation.impl that return Protocol

Modifier and Type	Method	Description
Protocol	ClarityProcessAutomationImpl.findProtocol(String name)	Find a protocol by name.

Methods in org.cruk.clarity.api.automation.impl with parameters of type Protocol

Modifier and Type	Method	Description
ProtocolStep	ClarityProcessAutomationImpl.findStep(Protocol protocol, String name)	Find a step in a protocol by name.