Uses of Class
com.genologics.ri.stepconfiguration.ProtocolStep

Packages that use ProtocolStep

Package	Description
com.genologics.ri.protocolconfiguration	Provides JAXB bindings for the protocol configuration domain model.
com.genologics.ri.stage	Entities for workflow stages in the Clarity system.
com.genologics.ri.step	Entities for workflow steps in the Clarity system.
com.genologics.ri.stepconfiguration	Entities for step configuration in the Clarity system.
org.cruk.clarity.api	The main public package of the Clarity API.
org.cruk.clarity.api.automation	Tools to help move steps through Clarity using the API that allows processes to be run as if they are done through the browser, rather than the ExecutableProcess mechanism.
org.cruk.clarity.api.automation.impl	Implementation of the automation service.
org.cruk.clarity.api.impl	Concrete implementation classes of the Clarity API.

Uses of ProtocolStep in com.genologics.ri.protocolconfiguration

Fields in com.genologics.ri.protocolconfiguration with type parameters of type ProtocolStep

Modifier and Type	Field	Description
protected List<ProtocolStep>	Protocol.steps	The list of steps in this protocol.

Methods in com.genologics.ri.protocolconfiguration that return types with arguments of type ProtocolStep

Modifier and Type	Method	Description
List<ProtocolStep>	Protocol.getSteps()	Gets the list of steps in this protocol.

Uses of ProtocolStep in com.genologics.ri.stage

Methods in com.genologics.ri.stage that return types with arguments of type ProtocolStep

Modifier and Type	Method	Description
Class<ProtocolStep>	ProtocolStepLink.getEntityClass()	Gets the entity class for this link.

Method parameters in com.genologics.ri.stage with type arguments of type ProtocolStep

Modifier and Type	Method	Description
void	Stage.setStep(Linkable<ProtocolStep> step)	Sets the protocol step for this stage.

Constructor parameters in com.genologics.ri.stage with type arguments of type ProtocolStep

Modifier	Constructor	Description
	ProtocolStepLink(Linkable<ProtocolStep> link)	Constructor from a linkable protocol step object.

Uses of ProtocolStep in com.genologics.ri.step

Methods in com.genologics.ri.step that return types with arguments of type ProtocolStep

Modifier and Type	Method	Description
Class<ProtocolStep>	StepConfiguration.getEntityClass()	Get the class of the true, full LIMS entity this object links to.

Methods in com.genologics.ri.step with parameters of type ProtocolStep

Modifier and Type	Method	Description
void	StepCreation.setConfiguration(ProtocolStep step)	Sets the step configuration from a protocol step.

Method parameters in com.genologics.ri.step with type arguments of type ProtocolStep

Modifier and Type	Method	Description
void	StepCreation.setConfiguration(Linkable<ProtocolStep> step)	Sets the step configuration from a protocol step link.
void	StepConfiguration.setProtocolStep(Linkable<ProtocolStep> protocolStep)	Sets the protocol step from a linkable object.
void	NextAction.setReworkStep(Linkable<ProtocolStep> step)	Sets the rework step.
void	NextAction.setStep(Linkable<ProtocolStep> step)	Sets the next step.

Constructors in com.genologics.ri.step with parameters of type ProtocolStep

Modifier	Constructor	Description
	StepConfiguration(ProtocolStep step)	Creates a step configuration from a protocol step.
	StepCreation(ProtocolStep step)	Constructor taking a protocol step.

Constructor parameters in com.genologics.ri.step with type arguments of type ProtocolStep

Modifier	Constructor	Description
	NextAction(URI artifactUri, ActionType action, Linkable<ProtocolStep> nextStep)	Constructor with artifact URI, action, and next step.
	StepConfiguration(Linkable<ProtocolStep> step)	Creates a step configuration from a linkable protocol step.
	StepCreation(Linkable<ProtocolStep> step)	Constructor taking a protocol step link.

Uses of ProtocolStep in com.genologics.ri.stepconfiguration

Methods in com.genologics.ri.stepconfiguration that return ProtocolStep

Modifier and Type	Method	Description
ProtocolStep	ObjectFactory.createProtocolStep()	Creates a new ProtocolStep instance.

Methods in com.genologics.ri.stepconfiguration that return types with arguments of type ProtocolStep

Modifier and Type	Method	Description
JAXBElement<ProtocolStep>	ObjectFactory.createStep(ProtocolStep value)	Creates a JAXBElement wrapping a ProtocolStep.
Class<ProtocolStep>	NextStep.getEntityClass()	Gets the entity class for this link.
LimsLink<ProtocolStep>	ProtocolStep.getLink()	Get a concrete link object to this Linkable thing.

Methods in com.genologics.ri.stepconfiguration with parameters of type ProtocolStep

Modifier and Type	Method	Description
JAXBElement<ProtocolStep>	ObjectFactory.createStep(ProtocolStep value)	Creates a JAXBElement wrapping a ProtocolStep.

Method parameters in com.genologics.ri.stepconfiguration with type arguments of type ProtocolStep

Modifier and Type	Method	Description
void	NextStep.setNextStep(Linkable<ProtocolStep> step)	Sets the next step from a linkable protocol step.

Constructors in com.genologics.ri.stepconfiguration with parameters of type ProtocolStep

Modifier	Constructor	Description
	NextStep(ProtocolStep step)	Constructor from a protocol step entity.

Uses of ProtocolStep in org.cruk.clarity.api

Method parameters in org.cruk.clarity.api with type arguments of type ProtocolStep

Modifier and Type	Method	Description
List<LimsEntityLink<Artifact>>	ClarityAPI.listQueue(Linkable<ProtocolStep> protocolStep)	List the artifacts in the queue for the given protocol step.
List<LimsEntityLink<Artifact>>	ClarityAPI.listQueue(Linkable<ProtocolStep> protocolStep, Map<String,?> searchTerms)	List the artifacts in the queue for the given protocol step, additionally filtering using the parameters available for the "queues" end point.

Uses of ProtocolStep in org.cruk.clarity.api.automation

Methods in org.cruk.clarity.api.automation that return ProtocolStep

Modifier and Type	Method	Description
ProtocolStep	ClarityProcessAutomation.findStep(Protocol protocol, String name)	Find a step in a protocol by name.

Uses of ProtocolStep in org.cruk.clarity.api.automation.impl

Methods in org.cruk.clarity.api.automation.impl that return ProtocolStep

Modifier and Type	Method	Description
ProtocolStep	ClarityProcessAutomationImpl.findStep(Protocol protocol, String name)	Find a step in a protocol by name.

Uses of ProtocolStep in org.cruk.clarity.api.impl

Method parameters in org.cruk.clarity.api.impl with type arguments of type ProtocolStep

Modifier and Type	Method	Description
List<LimsEntityLink<Artifact>>	ClarityAPIImpl.listQueue(Linkable<ProtocolStep> protocolStep)	List the artifacts in the queue for the given protocol step.
List<LimsEntityLink<Artifact>>	ClarityAPIImpl.listQueue(Linkable<ProtocolStep> protocolStep, Map<String,?> searchTerms)	List the artifacts in the queue for the given protocol step, additionally filtering using the parameters available for the "queues" end point.