Module org.cruk.clarity.api

Package com.genologics.ri.artifact

Class Artifact

java.lang.Object

com.genologics.ri.artifact.Artifact

All Implemented Interfaces:

LimsEntity<Artifact>, LimsEntityLinkable<Artifact>, Linkable<Artifact>, Locatable, UDFHolder, Serializable

public class Artifact
extends Object
implements LimsEntity<Artifact>, UDFHolder, Serializable

The detailed representation of an Artifact.

An Artifact represents the inputs to or outputs from a process. An Artifact is classified by its type (Analyte, ResultFile, etc).

Artifacts do not support HTTP POST requests.

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected List<ArtifactGroupLink>	artifactGroups
protected ControlTypeLink	controlType
protected DemuxLink	demux
protected List<UDF>	fields
protected ClarityFile	file
protected String	limsid
protected Location	location
protected String	name
protected OutputType	outputType
protected ParentProcessLink	parentProcess
protected QCFlag	qcFlag
protected List<ReagentLabel>	reagentLabels
protected List<SampleLink>	samples
protected String	type
protected URI	uri
protected List<WorkflowStage>	workflowStages
protected Boolean	workingFlag

Constructor Summary

Constructors

Constructor	Description
Artifact()

Method Summary

Modifier and Type	Method	Description
ArtifactGroupLink	addArtifactGroup(Linkable<ArtifactGroup> link)
ReagentLabel	addReagentLabel(ReagentLabel label)
ReagentLabel	addReagentLabel(String labelName)
UDF	addUserDefinedField(UDF udf)	Deprecated.
UDF	addUserDefinedField(String name, FieldType type, String value)	Deprecated.
WorkflowStage	addWorkflowStage(WorkflowStage stage)
List<ArtifactGroupLink>	getArtifactGroups()
ControlTypeLink	getControlType()
DemuxLink	getDemux()
ClarityFile	getFile()	File provides a URI linking to the detailed representation of the File associated with the Artifact.
String	getLimsid()	Get the LIMS id for this object.
Location	getLocation()
String	getName()
OutputType	getOutputType()
ParentProcessLink	getParentProcess()
QCFlag	getQCFlag()
List<ReagentLabel>	getReagentLabels()
List<SampleLink>	getSamples()
String	getType()
URI	getUri()	Get the URI of this object.
UDF	getUserDefinedField(String name)	Deprecated.
List<UDF>	getUserDefinedFields()	Get a list of user defined fields held by the entity.
List<WorkflowStage>	getWorkflowStages()
Boolean	isWorkingFlag()
void	setArtifactGroups(Collection<? extends Linkable<ArtifactGroup>> links)
void	setControlType(Linkable<ControlType> link)
void	setDemux(Linkable<Demux> demux)
void	setFile(ClarityFile value)
void	setLimsid(String value)	Set the LIMS id for this object.
void	setLocation(Location value)
void	setName(String value)
void	setOutputType(OutputType value)
ParentProcessLink	setParentProcess(LimsEntityLinkable<ClarityProcess> link)
void	setQCFlag(QCFlag value)
void	setSamples(Collection<? extends LimsEntityLinkable<Sample>> links)
void	setType(String value)
void	setUri(URI value)	Set the URI of this object.
void	setWorkflowStages(Collection<WorkflowStage> workflowStages)
void	setWorkingFlag(Boolean value)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.genologics.ri.LimsEntityLinkable

getLimsId, setLimsId

Methods inherited from interface com.genologics.ri.userdefined.UDFHolder

getUDF, getUDF, getUDF, getUdfs, getUDFs, getUDFValue, getUDFValue, getUDFValue, getUDFValue, setUDF

Field Details

name

protected String name

type

protected String type

outputType

protected OutputType outputType

parentProcess

protected ParentProcessLink parentProcess

qcFlag

protected QCFlag qcFlag

location

protected Location location

workingFlag

protected Boolean workingFlag

samples

protected List<SampleLink> samples

reagentLabels

protected List<ReagentLabel> reagentLabels

controlType

protected ControlTypeLink controlType

fields

protected List<UDF> fields

file

protected ClarityFile file

artifactGroups

protected List<ArtifactGroupLink> artifactGroups

workflowStages

protected List<WorkflowStage> workflowStages

Since:

2.20

demux

protected DemuxLink demux

Since:

2.26

limsid

protected String limsid

uri

protected URI uri

Constructor Details

Artifact

public Artifact()

Method Details

getName

public String getName()

setName

public void setName(String value)

getType

public String getType()

setType

public void setType(String value)

getOutputType

public OutputType getOutputType()

setOutputType

public void setOutputType(OutputType value)

getParentProcess

public ParentProcessLink getParentProcess()

setParentProcess

public ParentProcessLink setParentProcess(LimsEntityLinkable<ClarityProcess> link)

getQCFlag

public QCFlag getQCFlag()

setQCFlag

public void setQCFlag(QCFlag value)

getLocation

public Location getLocation()

setLocation

public void setLocation(Location value)

isWorkingFlag

public Boolean isWorkingFlag()

setWorkingFlag

public void setWorkingFlag(Boolean value)

getSamples

public List<SampleLink> getSamples()

setSamples

public void setSamples(Collection<? extends LimsEntityLinkable<Sample>> links)

getReagentLabels

public List<ReagentLabel> getReagentLabels()

addReagentLabel

public ReagentLabel addReagentLabel(ReagentLabel label)

addReagentLabel

public ReagentLabel addReagentLabel(String labelName)

getControlType

public ControlTypeLink getControlType()

setControlType

public void setControlType(Linkable<ControlType> link)

getUserDefinedFields

public List<UDF> getUserDefinedFields()

Description copied from interface: UDFHolder

Get a list of user defined fields held by the entity.

Specified by:

getUserDefinedFields in interface UDFHolder

Returns:

A list of UDF objects. This should never return null.

getUserDefinedField

@Deprecated
public UDF getUserDefinedField(String name)

Deprecated.

addUserDefinedField

@Deprecated
public UDF addUserDefinedField(UDF udf)

Deprecated.

addUserDefinedField

@Deprecated
public UDF addUserDefinedField(String name,
 FieldType type,
 String value)

Deprecated.

getFile

public ClarityFile getFile()

File provides a URI linking to the detailed representation of the File associated with the Artifact.

Returns:

The file link, if present.

setFile

public void setFile(ClarityFile value)

getArtifactGroups

public List<ArtifactGroupLink> getArtifactGroups()

setArtifactGroups

public void setArtifactGroups(Collection<? extends Linkable<ArtifactGroup>> links)

addArtifactGroup

public ArtifactGroupLink addArtifactGroup(Linkable<ArtifactGroup> link)

getWorkflowStages

public List<WorkflowStage> getWorkflowStages()

setWorkflowStages

public void setWorkflowStages(Collection<WorkflowStage> workflowStages)

addWorkflowStage

public WorkflowStage addWorkflowStage(WorkflowStage stage)

getDemux

public DemuxLink getDemux()

setDemux

public void setDemux(Linkable<Demux> demux)

getLimsid

public String getLimsid()

Description copied from interface: LimsEntityLinkable

Get the LIMS id for this object.

Specified by:

getLimsid in interface LimsEntityLinkable<Artifact>

Returns:

The LIMS id.

setLimsid

public void setLimsid(String value)

Description copied from interface: LimsEntityLinkable

Set the LIMS id for this object.

Specified by:

setLimsid in interface LimsEntityLinkable<Artifact>

Parameters:

value - The new LIMS id.

getUri

public URI getUri()

Description copied from interface: Locatable

Get the URI of this object.

Specified by:

getUri in interface Locatable

Returns:

The URI.

setUri

public void setUri(URI value)

Description copied from interface: Locatable

Set the URI of this object.

Specified by:

setUri in interface Locatable

Parameters:

value - The new URI.

toString

public String toString()

Overrides:

toString in class Object