Module org.cruk.clarity.api

Package com.genologics.ri.sample

Class SampleBase

java.lang.Object

com.genologics.ri.sample.SampleBase

All Implemented Interfaces:

UDFHolder, Serializable

Direct Known Subclasses:

Sample, SampleCreation

public class SampleBase
extends Object
implements UDFHolder, Serializable

The base representation of a Sample, defining common elements for both Sample and Sample creation.

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected ArtifactLink	artifact
protected BioSource	bioSource	Deprecated.
protected ControlTypeLink	controlType
protected Date	dateCompleted
protected Date	dateReceived
protected List<ExternalId>	externalIds
protected List<UDF>	fields
protected List<ClarityFile>	files
protected String	limsid
protected String	name
protected ProjectLink	project
protected Submitter	submitter
protected UDT	type
protected URI	uri

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	SampleBase()
protected	SampleBase(SampleBase other)

Method Summary

Modifier and Type	Method	Description
ClarityFile	addFile(ClarityFile f)
UDF	addUserDefinedField(UDF udf)	Deprecated.
UDF	addUserDefinedField(String name, FieldType type, String value)	Deprecated.
ArtifactLink	getArtifact()
BioSource	getBioSource()	Deprecated.
ControlTypeLink	getControlType()
Date	getDateCompleted()
Date	getDateReceived()
List<ExternalId>	getExternalIds()
List<ClarityFile>	getFiles()
String	getLimsid()
String	getName()
ProjectLink	getProject()
Submitter	getSubmitter()
URI	getUri()
UDF	getUserDefinedField(String name)	Deprecated.
List<UDF>	getUserDefinedFields()	Get a list of user defined fields held by the entity.
UDT	getUserDefinedType()
boolean	isControlSample()
void	setArtifact(LimsEntityLinkable<Artifact> artifact)
void	setBioSource(BioSource bioSource)	Deprecated.
void	setControlType(Linkable<ControlType> controlType)
void	setDateCompleted(Date value)
void	setDateReceived(Date value)
void	setLimsid(String value)
void	setName(String value)
void	setProject(LimsEntityLinkable<Project> project)
Submitter	setSubmitter(Linkable<Researcher> link)
void	setUri(URI value)
UDT	setUserDefinedType(UDT value)
UDT	setUserDefinedType(String type)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.genologics.ri.userdefined.UDFHolder

getUDF, getUDF, getUDF, getUdfs, getUDFs, getUDFValue, getUDFValue, getUDFValue, getUDFValue, setUDF

Field Details

name

protected String name

dateReceived

protected Date dateReceived

dateCompleted

protected Date dateCompleted

project

protected ProjectLink project

controlType

protected ControlTypeLink controlType

submitter

protected Submitter submitter

artifact

protected ArtifactLink artifact

bioSource

@Deprecated
protected BioSource bioSource

Deprecated.

type

protected UDT type

fields

protected List<UDF> fields

externalIds

protected List<ExternalId> externalIds

files

protected List<ClarityFile> files

limsid

protected String limsid

uri

protected URI uri

Constructor Details

SampleBase

protected SampleBase()

SampleBase

protected SampleBase(SampleBase other)

Method Details

getName

public String getName()

setName

public void setName(String value)

getDateReceived

public Date getDateReceived()

setDateReceived

public void setDateReceived(Date value)

getDateCompleted

public Date getDateCompleted()

setDateCompleted

public void setDateCompleted(Date value)

getProject

public ProjectLink getProject()

setProject

public void setProject(LimsEntityLinkable<Project> project)

getControlType

public ControlTypeLink getControlType()

setControlType

public void setControlType(Linkable<ControlType> controlType)

isControlSample

public boolean isControlSample()

getSubmitter

public Submitter getSubmitter()

setSubmitter

public Submitter setSubmitter(Linkable<Researcher> link)

getArtifact

public ArtifactLink getArtifact()

setArtifact

public void setArtifact(LimsEntityLinkable<Artifact> artifact)

getBioSource

@Deprecated
public BioSource getBioSource()

Deprecated.

setBioSource

@Deprecated
public void setBioSource(BioSource bioSource)

Deprecated.

getUserDefinedType

public UDT getUserDefinedType()

setUserDefinedType

public UDT setUserDefinedType(UDT value)

setUserDefinedType

public UDT setUserDefinedType(String type)

getUserDefinedFields

public List<UDF> getUserDefinedFields()

Description copied from interface: UDFHolder

Get a list of user defined fields held by the entity.

Specified by:

getUserDefinedFields in interface UDFHolder

Returns:

A list of UDF objects. This should never return null.

getUserDefinedField

@Deprecated
public UDF getUserDefinedField(String name)

Deprecated.

addUserDefinedField

@Deprecated
public UDF addUserDefinedField(UDF udf)

Deprecated.

addUserDefinedField

@Deprecated
public UDF addUserDefinedField(String name,
 FieldType type,
 String value)

Deprecated.

getExternalIds

public List<ExternalId> getExternalIds()

getFiles

public List<ClarityFile> getFiles()

addFile

public ClarityFile addFile(ClarityFile f)

getLimsid

public String getLimsid()

setLimsid

public void setLimsid(String value)

getUri

public URI getUri()

setUri

public void setUri(URI value)

toString

public String toString()

Overrides:

toString in class Object